Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:35:47 -0400 (Wed, 17 Oct 2018).
Package 669/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GWASTools 1.26.1 Stephanie M. Gogarten
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: GWASTools |
Version: 1.26.1 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GWASTools_1.26.1.tar.gz && rm -rf GWASTools.buildbin-libdir && mkdir GWASTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GWASTools.buildbin-libdir GWASTools_1.26.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GWASTools_1.26.1.zip && rm GWASTools_1.26.1.tar.gz GWASTools_1.26.1.zip |
StartedAt: 2018-10-16 19:11:33 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 19:15:10 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 217.4 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GWASTools_1.26.1.tar.gz && rm -rf GWASTools.buildbin-libdir && mkdir GWASTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GWASTools.buildbin-libdir GWASTools_1.26.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GWASTools_1.26.1.zip && rm GWASTools_1.26.1.tar.gz GWASTools_1.26.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 329k 100 329k 0 0 5802k 0 --:--:-- --:--:-- --:--:-- 6592k install for i386 * installing *source* package 'GWASTools' ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GWASTools' finding HTML links ... done BAFfromClusterMeans html finding level-2 HTML links ... done BAFfromGenotypes html GWASTools-package html GdsGenotypeReader-class html GdsIntensityReader-class html GdsReader-class html GenotypeData-class html HLA html IntensityData-class html MatrixGenotypeReader-class html NcdfGenotypeReader-class html NcdfIntensityReader-class html NcdfReader-class html ScanAnnotationDataFrame-class html ScanAnnotationSQLite-class html SnpAnnotationDataFrame-class html SnpAnnotationSQLite-class html alleleFrequency html allequal html anomDetectBAF html anomDetectLOH html anomIdentifyLowQuality html anomSegStats html apartSnpSelection html assocCoxPH html assocRegression html batchTest html centromeres html chromIntensityPlot html convertNcdfGds html createDataFile html defunct html duplicateDiscordance html duplicateDiscordanceAcrossDatasets html duplicateDiscordanceProbability html exactHWE html findBAFvariance html gdsSubset html genoClusterPlot html genotypeToCharacter html getVariable html getobj html hetByScanChrom html hetBySnpSex html ibdPlot html imputedDosageFile html intensityOutliersPlot html manhattanPlot html meanIntensityByScanChrom html mendelErr html mendelList html missingGenotypeByScanChrom html missingGenotypeBySnpSex html pasteSorted html pcaSnpFilters html pedigreeCheck html pedigreeDeleteDuplicates html pedigreeMaxUnrelated html pedigreePairwiseRelatedness html plinkUtils html pseudoautoIntensityPlot html pseudoautosomal html qqPlot html qualityScoreByScan html qualityScoreBySnp html readWriteFirst html relationsMeanVar html saveas html setMissingGenotypes html simulateGenotypeMatrix html snpCorrelationPlot html snpStats html vcfWrite html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'GWASTools' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'GWASTools' as GWASTools_1.26.1.zip * DONE (GWASTools) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'GWASTools' successfully unpacked and MD5 sums checked In R CMD INSTALL