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INSTALL report for DelayedMatrixStats on tokay2

This page was generated on 2018-10-17 08:44:48 -0400 (Wed, 17 Oct 2018).

Package 366/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DelayedMatrixStats 1.2.0
Peter Hickey
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/DelayedMatrixStats
Branch: RELEASE_3_7
Last Commit: de868e7
Last Changed Date: 2018-04-30 10:35:48 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DelayedMatrixStats
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DelayedMatrixStats_1.2.0.tar.gz && rm -rf DelayedMatrixStats.buildbin-libdir && mkdir DelayedMatrixStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedMatrixStats.buildbin-libdir DelayedMatrixStats_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DelayedMatrixStats_1.2.0.zip && rm DelayedMatrixStats_1.2.0.tar.gz DelayedMatrixStats_1.2.0.zip
StartedAt: 2018-10-16 18:53:49 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 18:54:46 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 57.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DelayedMatrixStats_1.2.0.tar.gz && rm -rf DelayedMatrixStats.buildbin-libdir && mkdir DelayedMatrixStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedMatrixStats.buildbin-libdir DelayedMatrixStats_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DelayedMatrixStats_1.2.0.zip && rm DelayedMatrixStats_1.2.0.tar.gz DelayedMatrixStats_1.2.0.zip
###
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install for i386

* installing *source* package 'DelayedMatrixStats' ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DelayedMatrixStats'
    finding HTML links ... done
    DelayedMatrixStats                      html  
    colAlls                                 html  
    finding level-2 HTML links ... done

    colAnyNAs                               html  
    colAvgsPerRowSet                        html  
    colCollapse                             html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0Wcxdj/R.INSTALL143421b72808/DelayedMatrixStats/man/colCollapse.Rd:83: file link '[' in package 'base' does not exist and so has been treated as a topic
    colCounts                               html  
    colCummaxs                              html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0Wcxdj/R.INSTALL143421b72808/DelayedMatrixStats/man/colCummaxs.Rd:131: file link 'cumprod' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0Wcxdj/R.INSTALL143421b72808/DelayedMatrixStats/man/colCummaxs.Rd:132: file link 'cummin' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0Wcxdj/R.INSTALL143421b72808/DelayedMatrixStats/man/colCummaxs.Rd:132: file link 'cummax' in package 'base' does not exist and so has been treated as a topic
    colDiffs                                html  
    colIQRDiffs                             html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0Wcxdj/R.INSTALL143421b72808/DelayedMatrixStats/man/colIQRDiffs.Rd:117: file link 'var' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0Wcxdj/R.INSTALL143421b72808/DelayedMatrixStats/man/colIQRDiffs.Rd:172: file link 'var' in package 'stats' does not exist and so has been treated as a topic
    colIQRs                                 html  
    colLogSumExps                           html  
    colMads                                 html  
    colMeans2                               html  
    colMedians                              html  
    colOrderStats                           html  
    colProds                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0Wcxdj/R.INSTALL143421b72808/DelayedMatrixStats/man/colProds.Rd:78: file link 'is.nan' in package 'base' does not exist and so has been treated as a topic
    colQuantiles                            html  
    colRanks                                html  
    colSums2                                html  
    colTabulates                            html  
    colVars                                 html  
    colWeightedMads                         html  
    colWeightedMeans                        html  
    colWeightedMedians                      html  
    colWeightedVars                         html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0Wcxdj/R.INSTALL143421b72808/DelayedMatrixStats/man/colWeightedVars.Rd:107: file link 'var' in package 'stats' does not exist and so has been treated as a topic
    from_DelayedArray_to_simple_seed_class
                                            html  
    rowblock_APPLY                          html  
    seedClass                               html  
    subset_by_Nindex                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'DelayedMatrixStats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DelayedMatrixStats' as DelayedMatrixStats_1.2.0.zip
* DONE (DelayedMatrixStats)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'DelayedMatrixStats' successfully unpacked and MD5 sums checked
In R CMD INSTALL