Hervé Pagès
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/DelayedArray |
| Branch: RELEASE_3_7 |
| Last Commit: bdb0ac0 |
| Last Changed Date: 2018-09-10 18:06:18 -0400 (Mon, 10 Sep 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:43:13 -0400 (Wed, 17 Oct 2018).
| Package 365/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DelayedArray 0.6.6 Hervé Pagès
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: DelayedArray |
| Version: 0.6.6 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DelayedArray_0.6.6.tar.gz && rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedArray.buildbin-libdir DelayedArray_0.6.6.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DelayedArray_0.6.6.zip && rm DelayedArray_0.6.6.tar.gz DelayedArray_0.6.6.zip |
| StartedAt: 2018-10-16 18:52:50 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:53:47 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 57.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DelayedArray_0.6.6.tar.gz && rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedArray.buildbin-libdir DelayedArray_0.6.6.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DelayedArray_0.6.6.zip && rm DelayedArray_0.6.6.tar.gz DelayedArray_0.6.6.zip
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install for i386
* installing *source* package 'DelayedArray' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'aperm' in package 'DelayedArray'
in method for 'coerce' with signature '"DelayedMatrix","dgCMatrix"': no definition for class "dgCMatrix"
in method for 'coerce' with signature '"DelayedMatrix","sparseMatrix"': no definition for class "sparseMatrix"
Creating a generic function for 'sweep' from package 'base' in package 'DelayedArray'
Creating a new generic function for 'apply' in package 'DelayedArray'
Creating a generic function for 'dnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'ppois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dlogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'plogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qlogis' from package 'stats' in package 'DelayedArray'
Creating a new generic function for 'rowMaxs' in package 'DelayedArray'
Creating a new generic function for 'colMaxs' in package 'DelayedArray'
Creating a new generic function for 'rowMins' in package 'DelayedArray'
Creating a new generic function for 'colMins' in package 'DelayedArray'
Creating a new generic function for 'rowRanges' in package 'DelayedArray'
Creating a new generic function for 'colRanges' in package 'DelayedArray'
** help
*** installing help indices
converting help for package 'DelayedArray'
finding HTML links ... done
Array-class html
ArrayGrid-class html
DelayedArray-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-class.Rd:119: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-class.Rd:203: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-class.Rd:205: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
DelayedArray-stats html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-stats.Rd:60: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-stats.Rd:60: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-stats.Rd:61: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-stats.Rd:61: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-stats.Rd:68: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-stats.Rd:68: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-stats.Rd:69: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-stats.Rd:69: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-stats.Rd:75: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
DelayedArray-utils html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:99: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:100: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:100: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:119: file link 'Summary' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:133: file link 'is.na' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:133: file link '!' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:135: file link '%*%' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:138: file link 'rowSums' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:139: file link 'rowMaxs' in package 'matrixStats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:155: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:158: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:159: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/DelayedArray-utils.Rd:159: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
DelayedOp-class html
RleArray-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/RleArray-class.Rd:68: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/RleArray-class.Rd:91: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/RleArray-class.Rd:101: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/RleArray-class.Rd:103: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
bind-arrays html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/bind-arrays.Rd:40: file link 'rbind' in package 'base' does not exist and so has been treated as a topic
block_processing html
extract_array html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/extract_array.Rd:46: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/extract_array.Rd:103: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
realize html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqGpHtE/R.INSTALLef44904192f/DelayedArray/man/realize.Rd:79: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
showtree html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'DelayedArray' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DelayedArray' as DelayedArray_0.6.6.zip
* DONE (DelayedArray)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'DelayedArray' successfully unpacked and MD5 sums checked
In R CMD INSTALL