Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:41:15 -0400 (Wed, 17 Oct 2018).
Package 350/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
DChIPRep 1.10.0 Bernd Klaus
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: DChIPRep |
Version: 1.10.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DChIPRep_1.10.0.tar.gz && rm -rf DChIPRep.buildbin-libdir && mkdir DChIPRep.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DChIPRep.buildbin-libdir DChIPRep_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DChIPRep_1.10.0.zip && rm DChIPRep_1.10.0.tar.gz DChIPRep_1.10.0.zip |
StartedAt: 2018-10-16 20:32:15 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 20:33:41 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 86.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DChIPRep_1.10.0.tar.gz && rm -rf DChIPRep.buildbin-libdir && mkdir DChIPRep.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DChIPRep.buildbin-libdir DChIPRep_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DChIPRep_1.10.0.zip && rm DChIPRep_1.10.0.tar.gz DChIPRep_1.10.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 690k 100 690k 0 0 10.2M 0 --:--:-- --:--:-- --:--:-- 11.4M install for i386 * installing *source* package 'DChIPRep' ... ** R ** data *** moving datasets to lazyload DB Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'soGGi' ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DChIPRep' finding HTML links ... done DChIPRep html DChIPRepResults html DESeq2Data html FDRresults html TSS_galonska html chip_galonska html exampleChipData html exampleInputData html exampleSampleTable html getMATfromDataFrame html importData html importDataFromMatrices html importData_soGGi html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpuUhMO9/R.INSTALL25444b9498d/DChIPRep/man/importData_soGGi.Rd:36: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpuUhMO9/R.INSTALL25444b9498d/DChIPRep/man/importData_soGGi.Rd:14: file link 'GenomicRanges-class' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpuUhMO9/R.INSTALL25444b9498d/DChIPRep/man/importData_soGGi.Rd:27: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpuUhMO9/R.INSTALL25444b9498d/DChIPRep/man/importData_soGGi.Rd:65: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic input_galonska html plotProfiles html plotSignificance html resultsDChIPRep html robust_mean html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpuUhMO9/R.INSTALL25444b9498d/DChIPRep/man/robust_mean.Rd:17: file link 'smhuber' in package 'smoothmest' does not exist and so has been treated as a topic runTesting html sample_table_galonska html show html summarizeCountsPerPosition html testData html ** building package indices ** installing vignettes ** testing if installed package can be loaded Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'soGGi' In R CMD INSTALL install for x64 * installing *source* package 'DChIPRep' ... ** testing if installed package can be loaded Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'soGGi' * MD5 sums packaged installation of 'DChIPRep' as DChIPRep_1.10.0.zip * DONE (DChIPRep) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'DChIPRep' successfully unpacked and MD5 sums checked In R CMD INSTALL