Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:40:16 -0400 (Wed, 17 Oct 2018).
Package 296/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ComplexHeatmap 1.18.1 Zuguang Gu
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: ComplexHeatmap |
Version: 1.18.1 |
Command: rm -rf ComplexHeatmap.buildbin-libdir && mkdir ComplexHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_1.18.1.tar.gz |
StartedAt: 2018-10-17 06:11:48 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 06:12:18 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 30.2 seconds |
RetCode: 0 |
Status: OK |
PackageFile: ComplexHeatmap_1.18.1.zip |
PackageFileSize: 3.001 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf ComplexHeatmap.buildbin-libdir && mkdir ComplexHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_1.18.1.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'ComplexHeatmap' ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ComplexHeatmap' finding HTML links ... done AdditiveUnit-class html AdditiveUnit html ColorMapping-class html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/ColorMapping-class.rd:21: file link 'grob' in package 'grid' does not exist and so has been treated as a topic ColorMapping html ComplexHeatmap-package html Heatmap-class html Heatmap html HeatmapAnnotation-class html HeatmapAnnotation html HeatmapList-class html HeatmapList html Legend html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/Legend.rd:51: file link 'grob' in package 'grid' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/Legend.rd:48: file link 'grob' in package 'grid' does not exist and so has been treated as a topic SingleAnnotation-class html SingleAnnotation html add.AdditiveUnit html add_heatmap-Heatmap-method html add_heatmap-HeatmapAnnotation-method html add_heatmap-HeatmapList-method html add_heatmap-dispatch html adjust_dend_by_leaf_width html anno_barplot html anno_boxplot html anno_density html anno_histogram html anno_link html anno_oncoprint_barplot html anno_points html anno_text html annotation_legend_size-HeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/annotation_legend_size-HeatmapList-method.rd:16: file link 'grob' in package 'grid' does not exist and so has been treated as a topic color_mapping_legend-ColorMapping-method html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/color_mapping_legend-ColorMapping-method.rd:60: file link 'grob' in package 'grid' does not exist and so has been treated as a topic columnAnnotation html column_anno_barplot html column_anno_boxplot html column_anno_density html column_anno_histogram html column_anno_link html column_anno_points html column_anno_text html column_dend-Heatmap-method html column_dend-HeatmapList-method html column_dend-dispatch html column_order-Heatmap-method html column_order-HeatmapList-method html column_order-dispatch html component_height-Heatmap-method html component_height-HeatmapList-method html component_height-dispatch html component_width-Heatmap-method html component_width-HeatmapList-method html component_width-dispatch html decorate_annotation html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/decorate_annotation.rd:23: file link 'seekViewport' in package 'grid' does not exist and so has been treated as a topic decorate_column_dend html decorate_column_names html decorate_column_title html decorate_dend html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/decorate_dend.rd:25: file link 'seekViewport' in package 'grid' does not exist and so has been treated as a topic decorate_dimnames html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/decorate_dimnames.rd:25: file link 'seekViewport' in package 'grid' does not exist and so has been treated as a topic decorate_heatmap_body html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/decorate_heatmap_body.rd:23: file link 'seekViewport' in package 'grid' does not exist and so has been treated as a topic decorate_row_dend html decorate_row_names html decorate_row_title html decorate_title html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/decorate_title.rd:25: file link 'seekViewport' in package 'grid' does not exist and so has been treated as a topic densityHeatmap html dist2 html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/dist2.rd:16: file link 'as.dist' in package 'stats' does not exist and so has been treated as a topic draw-Heatmap-method html draw-HeatmapAnnotation-method html draw-HeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/draw-HeatmapList-method.rd:43: file link 'grob' in package 'grid' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/draw-HeatmapList-method.rd:46: file link 'grob' in package 'grid' does not exist and so has been treated as a topic draw-SingleAnnotation-method html draw-dispatch html draw_annotation-Heatmap-method html draw_annotation_legend-HeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/draw_annotation_legend-HeatmapList-method.rd:16: file link 'grob' in package 'grid' does not exist and so has been treated as a topic draw_dend-Heatmap-method html draw_dimnames-Heatmap-method html draw_heatmap_body-Heatmap-method html draw_heatmap_legend-HeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/draw_heatmap_legend-HeatmapList-method.rd:16: file link 'grob' in package 'grid' does not exist and so has been treated as a topic draw_heatmap_list-HeatmapList-method html draw_title-Heatmap-method html draw_title-HeatmapList-method html draw_title-dispatch html enhanced_basicplot html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/enhanced_basicplot.rd:32: file link 'grob' in package 'grid' does not exist and so has been treated as a topic get_color_mapping_list-HeatmapAnnotation-method html get_color_mapping_param_list-HeatmapAnnotation-method html grid.dendrogram html grid.dendrogram2 html heatmap_legend_size-HeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/heatmap_legend_size-HeatmapList-method.rd:16: file link 'grob' in package 'grid' does not exist and so has been treated as a topic ht_global_opt html is_abs_unit html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/is_abs_unit.rd:19: file link 'grob' in package 'grid' does not exist and so has been treated as a topic make_column_cluster-Heatmap-method html make_layout-Heatmap-method html make_layout-HeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/make_layout-HeatmapList-method.rd:53: file link 'grob' in package 'grid' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/make_layout-HeatmapList-method.rd:56: file link 'grob' in package 'grid' does not exist and so has been treated as a topic make_layout-dispatch html make_row_cluster-Heatmap-method html map_to_colors-ColorMapping-method html max_text_height html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/max_text_height.rd:15: file link 'textGrob' in package 'grid' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/max_text_height.rd:19: file link 'textGrob' in package 'grid' does not exist and so has been treated as a topic max_text_width html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/max_text_width.rd:15: file link 'textGrob' in package 'grid' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/max_text_width.rd:19: file link 'textGrob' in package 'grid' does not exist and so has been treated as a topic oncoPrint html packLegend html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmatXjb/R.INSTALL16c06afe306e/ComplexHeatmap/man/packLegend.rd:20: file link 'grob' in package 'grid' does not exist and so has been treated as a topic plotDataFrame html prepare-Heatmap-method html rowAnnotation html row_anno_barplot html row_anno_boxplot html row_anno_density html row_anno_histogram html row_anno_link html row_anno_points html row_anno_text html row_dend-Heatmap-method html row_dend-HeatmapList-method html row_dend-dispatch html row_order-Heatmap-method html row_order-HeatmapList-method html row_order-dispatch html selectArea html set_component_height-Heatmap-method html show-ColorMapping-method html show-Heatmap-method html show-HeatmapAnnotation-method html show-HeatmapList-method html show-SingleAnnotation-method html show-dispatch html unify_mat_list html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'ComplexHeatmap' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ComplexHeatmap' as ComplexHeatmap_1.18.1.zip * DONE (ComplexHeatmap) In R CMD INSTALL In R CMD INSTALL