Dario Strbenac
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/ClassifyR |
| Branch: RELEASE_3_7 |
| Last Commit: e553f79 |
| Last Changed Date: 2018-09-03 21:30:01 -0400 (Mon, 03 Sep 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:39:02 -0400 (Wed, 17 Oct 2018).
| Package 250/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ClassifyR 2.0.10 Dario Strbenac
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ClassifyR |
| Version: 2.0.10 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ClassifyR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings ClassifyR_2.0.10.tar.gz |
| StartedAt: 2018-10-17 01:08:43 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 01:19:06 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 622.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ClassifyR.Rcheck |
| Warnings: 1 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ClassifyR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings ClassifyR_2.0.10.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/ClassifyR.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ClassifyR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ClassifyR' version '2.0.10'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ClassifyR' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0yDb8o/R.INSTALL2130e72557c/ClassifyR/man/distribution.Rd:32: file link 'stat_density' in package 'ggplot2' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0yDb8o/R.INSTALL2130e72557c/ClassifyR/man/edgeRselection.Rd:45: file link 'edgeR' in package 'edgeR' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/ClassifyR.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.posterior_probs : <anonymous>: no visible global function definition
for 'dmvnorm'
plotFeatureClasses,DataFrame : <anonymous>: no visible binding for
global variable 'measurement'
plotFeatureClasses,DataFrame : <anonymous>: no visible binding for
global variable '..density..'
plotFeatureClasses,DataFrame : <anonymous>: no visible binding for
global variable 'legends grouping'
samplesMetricMap,list: no visible binding for global variable 'Class'
samplesMetricMap,list: no visible binding for global variable 'name'
samplesMetricMap,list: no visible binding for global variable 'type'
samplesMetricMap,list: no visible binding for global variable 'Metric'
selectionPlot,list: no visible binding for global variable 'Freq'
Undefined global functions or variables:
..density.. Class Freq Metric dmvnorm legends grouping measurement
name type
Consider adding
importFrom("base", "grouping")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
likelihoodRatioSelection 7.69 0.16 7.84
DMDselection 5.86 0.23 6.09
edgeRselection 5.56 0.12 5.69
selectionPlot 2.93 0.00 13.66
distribution 1.65 0.16 35.72
rankingPlot 1.65 0.02 11.75
ClassifyResult-class 0.42 0.21 33.86
runTests 0.32 0.17 35.33
elasticNetGLMinterface 0.14 0.00 13.51
previousSelection 0.07 0.00 21.36
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
likelihoodRatioSelection 8.94 0.03 8.97
DMDselection 7.11 0.11 7.22
plotFeatureClasses 5.97 0.00 5.97
selectionPlot 3.17 0.01 12.14
distribution 1.56 0.20 38.22
rankingPlot 1.69 0.00 10.56
ClassifyResult-class 0.57 0.19 36.02
runTests 0.32 0.19 37.71
elasticNetGLMinterface 0.11 0.03 13.52
previousSelection 0.06 0.00 19.62
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/ClassifyR.Rcheck/00check.log'
for details.
ClassifyR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ClassifyR_2.0.10.tar.gz && rm -rf ClassifyR.buildbin-libdir && mkdir ClassifyR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ClassifyR.buildbin-libdir ClassifyR_2.0.10.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ClassifyR_2.0.10.zip && rm ClassifyR_2.0.10.tar.gz ClassifyR_2.0.10.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 697k 100 697k 0 0 10.4M 0 --:--:-- --:--:-- --:--:-- 11.5M
install for i386
* installing *source* package 'ClassifyR' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ClassifyR'
finding HTML links ... done
ClassifyResult-class html
finding level-2 HTML links ... done
DLDAinterface html
DMDselection html
KolmogorovSmirnovSelection html
KullbackLeiblerSelection html
NSCpredictInterface html
NSCselectionInterface html
NSCtrainInterface html
PredictParams-class html
ROCplot html
ResubstituteParams-class html
SVMinterface html
SelectParams-class html
SelectResult-class html
TrainParams-class html
TransformParams-class html
asthmaDataset html
bartlettSelection html
calcPerformance html
characterOrDataFrame-class html
classifyInterface html
distribution html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0yDb8o/R.INSTALL2130e72557c/ClassifyR/man/distribution.Rd:32: file link 'stat_density' in package 'ggplot2' does not exist and so has been treated as a topic
dlda-class html
edgeRselection html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0yDb8o/R.INSTALL2130e72557c/ClassifyR/man/edgeRselection.Rd:45: file link 'edgeR' in package 'edgeR' does not exist and so has been treated as a topic
elasticNetGLMinterface html
fisherDiscriminant html
forestFeatures html
functionOrList-class html
functionOrNULL-class html
getLocationsAndScales html
leveneSelection html
likelihoodRatioSelection html
limmaSelection html
logisticRegressionInterface html
mixmodels html
mnlogit-class html
multnet-class html
naiveBayesKernel html
pamrtrained-class html
performancePlot html
plotFeatureClasses html
previousSelection html
randomForest-class html
randomForestInterface html
rankingPlot html
runTest html
runTests html
samplesMetricMap html
selectionPlot html
subtractFromLocation html
svm-class html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ClassifyR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ClassifyR' as ClassifyR_2.0.10.zip
* DONE (ClassifyR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'ClassifyR' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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ClassifyR.Rcheck/examples_i386/ClassifyR-Ex.timings
|
ClassifyR.Rcheck/examples_x64/ClassifyR-Ex.timings
|