Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:59:24 -0400 (Wed, 17 Oct 2018).
Package 330/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CTDquerier 1.0.0 Carles Hernandez-Ferrer
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: CTDquerier |
Version: 1.0.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CTDquerier.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CTDquerier_1.0.0.tar.gz |
StartedAt: 2018-10-16 20:45:39 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 20:47:54 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 134.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CTDquerier.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CTDquerier.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CTDquerier_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/CTDquerier.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CTDquerier/DESCRIPTION’ ... OK * this is package ‘CTDquerier’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CTDquerier’ can be installed ... OK * checking installed package size ... NOTE installed size is 8.3Mb sub-directories of 1Mb or more: data 3.8Mb extdata 4.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 161 marked UTF-8 strings * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed query_ctd_chem 11.317 1.011 15.832 query_ctd_gene 11.037 0.255 15.377 load_ctd_gene 10.401 0.260 10.750 query_ctd_dise 1.263 0.047 20.885 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.7-bioc/meat/CTDquerier.Rcheck/00check.log’ for details.
CTDquerier.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CTDquerier ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘CTDquerier’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (CTDquerier)
CTDquerier.Rcheck/CTDquerier-Ex.timings
name | user | system | elapsed | |
download_ctd_chem | 0.015 | 0.059 | 0.454 | |
download_ctd_genes | 1.604 | 0.287 | 2.511 | |
gala | 0.874 | 0.076 | 0.955 | |
get_table-methods | 0.705 | 0.041 | 0.758 | |
get_terms-methods | 0.662 | 0.030 | 0.700 | |
leaf_plot | 0.784 | 0.036 | 0.828 | |
load_ctd_chem | 4.317 | 0.118 | 4.458 | |
load_ctd_dise | 0.390 | 0.027 | 0.695 | |
load_ctd_gene | 10.401 | 0.260 | 10.750 | |
query_ctd_chem | 11.317 | 1.011 | 15.832 | |
query_ctd_dise | 1.263 | 0.047 | 20.885 | |
query_ctd_gene | 11.037 | 0.255 | 15.377 | |