BiocParallel 1.14.2
Bioconductor Package Maintainer
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/BiocParallel |
| Branch: RELEASE_3_7 |
| Last Commit: 1d5a449 |
| Last Changed Date: 2018-07-08 06:50:57 -0400 (Sun, 08 Jul 2018) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | [ OK ] | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL BiocParallel
###
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘BiocParallel’ ...
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.7-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c ipcmutex.cpp -o ipcmutex.o
In file included from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^
In file included from /usr/include/c++/5/memory:81:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^
In file included from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^
In file included from /usr/include/c++/5/memory:81:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^
In file included from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^
In file included from /usr/include/c++/5/memory:81:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^
In file included from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^
In file included from /usr/include/c++/5/memory:81:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^
In file included from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^
In file included from /usr/include/c++/5/memory:81:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^
In file included from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^
In file included from /usr/include/c++/5/memory:81:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^
In file included from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^
In file included from /usr/include/c++/5/memory:81:0,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:18,
from /home/biocbuild/bbs-3.7-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:1:
/usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.7-bioc/R/lib -L/usr/local/lib -o BiocParallel.so ipcmutex.o -L/home/biocbuild/bbs-3.7-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.7-bioc/R/library/BiocParallel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BiocParallel)