Rich Savage
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/BHC |
| Branch: RELEASE_3_7 |
| Last Commit: ee44b77 |
| Last Changed Date: 2018-04-30 10:35:14 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:23:08 -0400 (Wed, 17 Oct 2018).
| Package 115/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BHC 1.32.0 Rich Savage
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | [ OK ] | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BHC |
| Version: 1.32.0 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL BHC |
| StartedAt: 2018-10-15 17:55:57 -0400 (Mon, 15 Oct 2018) |
| EndedAt: 2018-10-15 17:56:15 -0400 (Mon, 15 Oct 2018) |
| EllapsedTime: 18.0 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL BHC
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘BHC’ ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for gcc option to support OpenMP... -fopenmp
checking whether OpenMP will work in this package... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c BlockCovarianceMatrix.cpp -o BlockCovarianceMatrix.o
In file included from BlockCovarianceMatrix.h:16:0,
from BlockCovarianceMatrix.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined
#define NDEBUG
^
<command-line>:0:0: note: this is the location of the previous definition
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c CubicSplineTimecourseDataSet.cpp -o CubicSplineTimecourseDataSet.o
In file included from DataSet.h:16:0,
from TimecourseDataSet.h:20,
from CubicSplineTimecourseDataSet.h:20,
from CubicSplineTimecourseDataSet.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined
#define NDEBUG
^
<command-line>:0:0: note: this is the location of the previous definition
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c DataSet.cpp -o DataSet.o
In file included from DataSet.h:16:0,
from DataSet.cpp:13:
header.h:16:0: warning: "NDEBUG" redefined
#define NDEBUG
^
<command-line>:0:0: note: this is the location of the previous definition
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c DirichletProcessMixture.cpp -o DirichletProcessMixture.o
In file included from DirichletProcessMixture.h:4:0,
from DirichletProcessMixture.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined
#define NDEBUG
^
<command-line>:0:0: note: this is the location of the previous definition
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c MultinomialDataSet.cpp -o MultinomialDataSet.o
In file included from DataSet.h:16:0,
from MultinomialDataSet.h:4,
from MultinomialDataSet.cpp:1:
header.h:16:0: warning: "NDEBUG" redefined
#define NDEBUG
^
<command-line>:0:0: note: this is the location of the previous definition
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c Node.cpp -o Node.o
In file included from Node.h:16:0,
from Node.cpp:13:
header.h:16:0: warning: "NDEBUG" redefined
#define NDEBUG
^
<command-line>:0:0: note: this is the location of the previous definition
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c RobustCubicSplineTimecourseDataSet.cpp -o RobustCubicSplineTimecourseDataSet.o
In file included from DataSet.h:16:0,
from TimecourseDataSet.h:20,
from CubicSplineTimecourseDataSet.h:20,
from RobustCubicSplineTimecourseDataSet.h:20,
from RobustCubicSplineTimecourseDataSet.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined
#define NDEBUG
^
<command-line>:0:0: note: this is the location of the previous definition
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c RobustSquaredExponentialTimecourseDataSet.cpp -o RobustSquaredExponentialTimecourseDataSet.o
In file included from SquaredExponentialTimecourseDataSet.h:20:0,
from RobustSquaredExponentialTimecourseDataSet.h:20,
from RobustSquaredExponentialTimecourseDataSet.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined
#define NDEBUG
^
<command-line>:0:0: note: this is the location of the previous definition
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c SquaredExponentialTimecourseDataSet.cpp -o SquaredExponentialTimecourseDataSet.o
In file included from SquaredExponentialTimecourseDataSet.h:20:0,
from SquaredExponentialTimecourseDataSet.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined
#define NDEBUG
^
<command-line>:0:0: note: this is the location of the previous definition
SquaredExponentialTimecourseDataSet.cpp: In member function ‘void SquaredExponentialTimecourseDataSet::OptimiseHyperparametersEstimatedNoise(std::vector<double>, double&, double&, double&, double)’:
SquaredExponentialTimecourseDataSet.cpp:339:30: warning: variable ‘gridLogEvidence’ set but not used [-Wunused-but-set-variable]
double currentLogEvidence, gridLogEvidence,
^
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c TimecourseDataSet.cpp -o TimecourseDataSet.o
In file included from DataSet.h:16:0,
from TimecourseDataSet.h:20,
from TimecourseDataSet.cpp:13:
header.h:16:0: warning: "NDEBUG" redefined
#define NDEBUG
^
<command-line>:0:0: note: this is the location of the previous definition
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c bhc.cpp -o bhc.o
In file included from bhc.cpp:17:0:
header.h:16:0: warning: "NDEBUG" redefined
#define NDEBUG
^
<command-line>:0:0: note: this is the location of the previous definition
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c gammaln.cpp -o gammaln.o
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c header.cpp -o header.o
In file included from header.cpp:1:0:
header.h:16:0: warning: "NDEBUG" redefined
#define NDEBUG
^
<command-line>:0:0: note: this is the location of the previous definition
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c multinomial_CalculateHyperparameters.cpp -o multinomial_CalculateHyperparameters.o
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c multinomial_OutputDendrogramInformation.cpp -o multinomial_OutputDendrogramInformation.o
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c multinomial_ReadInData.cpp -o multinomial_ReadInData.o
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c multinomial_bayeslink_binf.cpp -o multinomial_bayeslink_binf.o
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -fopenmp -I/usr/local/include -fpic -g -O2 -Wall -c multinomial_binevidence.cpp -o multinomial_binevidence.o
g++ -shared -L/home/biocbuild/bbs-3.7-bioc/R/lib -L/usr/local/lib -o BHC.so BlockCovarianceMatrix.o CubicSplineTimecourseDataSet.o DataSet.o DirichletProcessMixture.o MultinomialDataSet.o Node.o RobustCubicSplineTimecourseDataSet.o RobustSquaredExponentialTimecourseDataSet.o SquaredExponentialTimecourseDataSet.o TimecourseDataSet.o bhc.o gammaln.o header.o multinomial_CalculateHyperparameters.o multinomial_OutputDendrogramInformation.o multinomial_ReadInData.o multinomial_bayeslink_binf.o multinomial_binevidence.o -fopenmp -L/home/biocbuild/bbs-3.7-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.7-bioc/R/library/BHC/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BHC)