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###
### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL BGmix
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘BGmix’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for gcc option to accept ISO C99... none needed
checking for cos in -lm... yes
Untarring Boost header files...
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I ../boostIncl -I/usr/local/include -fpic -g -O2 -Wall -DUSING_R -c BGmix_main.cpp -o BGmix_main.o
In file included from ../boostIncl/boost/config.hpp:57:0,
from ../boostIncl/boost/random/linear_congruential.hpp:22,
from ../boostIncl/boost/random.hpp:36,
from rand.hh:32,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
../boostIncl/boost/random/detail/const_mod.hpp: In static member function ‘static IntType boost::random::const_mod<IntType, m>::invert_euclidian(IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_148’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/detail/const_mod.hpp:148:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(m > 0);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_152’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/detail/const_mod.hpp:152:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(boost::integer_traits<IntType>::is_signed);
^
../boostIncl/boost/random/linear_congruential.hpp: In constructor ‘boost::random::linear_congruential<IntType, a, c, m, val>::linear_congruential(IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_63’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_congruential.hpp:63:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
^
../boostIncl/boost/random/inversive_congruential.hpp: In constructor ‘boost::random::inversive_congruential<IntType, a, b, p, val>::inversive_congruential(IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_50’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/inversive_congruential.hpp:50:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(b >= 0);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_51’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/inversive_congruential.hpp:51:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(p > 1);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_52’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/inversive_congruential.hpp:52:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(a >= 1);
^
../boostIncl/boost/random/shuffle_output.hpp: In member function ‘void boost::random::shuffle_output<UniformRandomNumberGenerator, k, val>::init()’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_124’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/shuffle_output.hpp:124:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
^
../boostIncl/boost/random/mersenne_twister.hpp: In member function ‘void boost::random::mersenne_twister<UIntType, w, n, m, r, a, u, s, b, t, c, l, val>::seed(Generator&)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_99’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/mersenne_twister.hpp:99:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(!std::numeric_limits<result_type>::is_signed);
^
../boostIncl/boost/random/subtract_with_carry.hpp: In constructor ‘boost::random::subtract_with_carry<IntType, m, s, r, val>::subtract_with_carry()’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_83’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/subtract_with_carry.hpp:83:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_signed);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_84’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/subtract_with_carry.hpp:84:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
^
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor ‘boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(UIntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_55’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:55:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_56’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:56:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
^
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor ‘boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(It&, It)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_69’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:69:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_70’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:70:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
^
../boostIncl/boost/random/xor_combine.hpp: In member function ‘boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::result_type boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::operator()()’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_67’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/xor_combine.hpp:67:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_68’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/xor_combine.hpp:68:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<typename base2_type::result_type>::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_69’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/xor_combine.hpp:69:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::digits >= std::numeric_limits<typename base2_type::result_type>::digits);
^
../boostIncl/boost/random/uniform_smallint.hpp: In constructor ‘boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::uniform_smallint_float(boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::base_type&, IntType, IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_121’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_smallint.hpp:121:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_122’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_smallint.hpp:122:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(!std::numeric_limits<typename base_type::result_type>::is_integer);
^
../boostIncl/boost/random/uniform_smallint.hpp: In constructor ‘boost::uniform_smallint<IntType>::uniform_smallint(IntType, IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_170’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_smallint.hpp:170:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
^
../boostIncl/boost/random/uniform_int.hpp: In constructor ‘boost::uniform_int<IntType>::uniform_int(IntType, IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_47’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_int.hpp:47:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
^
../boostIncl/boost/random/random_number_generator.hpp: In constructor ‘boost::random_number_generator<UniformRandomNumberGenerator, IntType>::random_number_generator(boost::random_number_generator<UniformRandomNumberGenerator, IntType>::base_type&)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_38’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/random_number_generator.hpp:38:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
^
../boostIncl/boost/random/uniform_real.hpp: In constructor ‘boost::uniform_real<RealType>::uniform_real(RealType, RealType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_41’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_real.hpp:41:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
^
../boostIncl/boost/random/poisson_distribution.hpp: In constructor ‘boost::poisson_distribution<IntType, RealType>::poisson_distribution(const RealType&)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_38’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/poisson_distribution.hpp:38:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_39’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/poisson_distribution.hpp:39:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
^
BGmix_main.cpp: In function ‘void BGmix(int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double*, double*, double*, int*, int&, double*, int*, char**, char**, char**, char**, char**)’:
BGmix_main.cpp:165:17: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
if(neffects==2 & nconds==2){
^
BGmix_main.cpp:178:12: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
if(jstar!=-1 & ncomps==3){
^
BGmix_main.cpp:179:23: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
if(beta[i][jstar]<0.01 & beta[i][jstar]>-0.01) zg[i]=1;
^
BGmix_main.cpp:546:26: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
else if(move_choice_bz==3 | move_choice_bz==4){
^
BGmix_main.cpp:621:26: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
else if(move_choice_bz==3 | move_choice_bz==4){
^
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I ../boostIncl -I/usr/local/include -fpic -g -O2 -Wall -DUSING_R -c rundir.cpp -o rundir.o
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I ../boostIncl -I/usr/local/include -fpic -g -O2 -Wall -DUSING_R -c updates_BGmix.cpp -o updates_BGmix.o
In file included from ../boostIncl/boost/config.hpp:57:0,
from ../boostIncl/boost/random/linear_congruential.hpp:22,
from ../boostIncl/boost/random.hpp:36,
from rand.hh:32,
from updates_BGmix.h:1,
from updates_BGmix.cpp:3:
../boostIncl/boost/random/detail/const_mod.hpp: In static member function ‘static IntType boost::random::const_mod<IntType, m>::invert_euclidian(IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_148’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/detail/const_mod.hpp:148:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(m > 0);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_152’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/detail/const_mod.hpp:152:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(boost::integer_traits<IntType>::is_signed);
^
../boostIncl/boost/random/linear_congruential.hpp: In constructor ‘boost::random::linear_congruential<IntType, a, c, m, val>::linear_congruential(IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_63’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_congruential.hpp:63:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
^
../boostIncl/boost/random/inversive_congruential.hpp: In constructor ‘boost::random::inversive_congruential<IntType, a, b, p, val>::inversive_congruential(IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_50’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/inversive_congruential.hpp:50:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(b >= 0);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_51’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/inversive_congruential.hpp:51:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(p > 1);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_52’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/inversive_congruential.hpp:52:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(a >= 1);
^
../boostIncl/boost/random/shuffle_output.hpp: In member function ‘void boost::random::shuffle_output<UniformRandomNumberGenerator, k, val>::init()’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_124’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/shuffle_output.hpp:124:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
^
../boostIncl/boost/random/mersenne_twister.hpp: In member function ‘void boost::random::mersenne_twister<UIntType, w, n, m, r, a, u, s, b, t, c, l, val>::seed(Generator&)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_99’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/mersenne_twister.hpp:99:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(!std::numeric_limits<result_type>::is_signed);
^
../boostIncl/boost/random/subtract_with_carry.hpp: In constructor ‘boost::random::subtract_with_carry<IntType, m, s, r, val>::subtract_with_carry()’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_83’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/subtract_with_carry.hpp:83:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_signed);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_84’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/subtract_with_carry.hpp:84:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
^
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor ‘boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(UIntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_55’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:55:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_56’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:56:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
^
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor ‘boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(It&, It)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_69’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:69:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_70’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:70:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
^
../boostIncl/boost/random/xor_combine.hpp: In member function ‘boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::result_type boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::operator()()’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_67’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/xor_combine.hpp:67:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_68’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/xor_combine.hpp:68:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<typename base2_type::result_type>::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_69’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/xor_combine.hpp:69:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::digits >= std::numeric_limits<typename base2_type::result_type>::digits);
^
../boostIncl/boost/random/uniform_smallint.hpp: In constructor ‘boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::uniform_smallint_float(boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::base_type&, IntType, IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_121’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_smallint.hpp:121:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_122’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_smallint.hpp:122:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(!std::numeric_limits<typename base_type::result_type>::is_integer);
^
../boostIncl/boost/random/uniform_smallint.hpp: In constructor ‘boost::uniform_smallint<IntType>::uniform_smallint(IntType, IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_170’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_smallint.hpp:170:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
^
../boostIncl/boost/random/uniform_int.hpp: In constructor ‘boost::uniform_int<IntType>::uniform_int(IntType, IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_47’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_int.hpp:47:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
^
../boostIncl/boost/random/random_number_generator.hpp: In constructor ‘boost::random_number_generator<UniformRandomNumberGenerator, IntType>::random_number_generator(boost::random_number_generator<UniformRandomNumberGenerator, IntType>::base_type&)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_38’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/random_number_generator.hpp:38:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
^
../boostIncl/boost/random/uniform_real.hpp: In constructor ‘boost::uniform_real<RealType>::uniform_real(RealType, RealType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_41’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_real.hpp:41:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
^
../boostIncl/boost/random/poisson_distribution.hpp: In constructor ‘boost::poisson_distribution<IntType, RealType>::poisson_distribution(const RealType&)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_38’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/poisson_distribution.hpp:38:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_39’ locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/poisson_distribution.hpp:39:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
^
updates_BGmix.cpp: In function ‘void update_z_beta1_joint2(int*, double**, int*, int&, int&, double*, double&, double&, double**, double**, double**, int*, double**, double**, int&, int&, int&, int*, int&, int&, int&, Random&)’:
updates_BGmix.cpp:192:14: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
if(beta1try>0 | beta1try<-eta_down) indic = 0;
^
updates_BGmix.cpp:200:14: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
if(beta1try<0 | beta1try>eta_up) indic = 0;
^
updates_BGmix.cpp: In function ‘void predict(double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, double**, double*, double**, double**, double**, double**, double*, double*, int*, double**, double**, int*, double*, double&, double&, double&, double&, double&, int&, int&, int&, int&, int&, int*, int&, Random&)’:
updates_BGmix.cpp:870:19: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
if(move_choice_bz==1 | move_choice_bz==2){
^
updates_BGmix.cpp:883:24: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
else if(move_choice_bz==3 | move_choice_bz==4 | move_choice_bz==5){
^
updates_BGmix.cpp:883:65: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
else if(move_choice_bz==3 | move_choice_bz==4 | move_choice_bz==5){
^
updates_BGmix.cpp:893:21: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
if(move_choice_bz==3 | move_choice_bz==4) beta_jstar_pred = 0;
^
updates_BGmix.cpp: In function ‘void predict_t(double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, double*, double*, int*, double**, double**, int*, double*, double&, double&, double&, double&, double&, int&, int&, int&, int&, int&, int*, int&, Random&)’:
updates_BGmix.cpp:995:19: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
if(move_choice_bz==1 | move_choice_bz==2){
^
updates_BGmix.cpp:1008:24: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
else if(move_choice_bz==3 | move_choice_bz==4 | move_choice_bz==5){
^
updates_BGmix.cpp:1008:65: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
else if(move_choice_bz==3 | move_choice_bz==4 | move_choice_bz==5){
^
updates_BGmix.cpp:1018:21: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
if(move_choice_bz==3 | move_choice_bz==4) beta_jstar_pred = 0;
^
updates_BGmix.cpp:989:5: warning: variable ‘ind’ set but not used [-Wunused-but-set-variable]
int ind;
^
g++ -shared -L/home/biocbuild/bbs-3.7-bioc/R/lib -L/usr/local/lib -o BGmix.so BGmix_main.o rundir.o updates_BGmix.o -lm -L/home/biocbuild/bbs-3.7-bioc/R/lib -lR
rm -r ../boostIncl
installing to /home/biocbuild/bbs-3.7-bioc/R/library/BGmix/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BGmix)
