Brad Friedman
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/AnalysisPageServer |
| Branch: RELEASE_3_7 |
| Last Commit: 620c0ea |
| Last Changed Date: 2018-04-30 10:35:35 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:39:47 -0400 (Wed, 17 Oct 2018).
| Package 43/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| AnalysisPageServer 1.14.0 Brad Friedman
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: AnalysisPageServer |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/AnalysisPageServer_1.14.0.tar.gz && rm -rf AnalysisPageServer.buildbin-libdir && mkdir AnalysisPageServer.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AnalysisPageServer.buildbin-libdir AnalysisPageServer_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL AnalysisPageServer_1.14.0.zip && rm AnalysisPageServer_1.14.0.tar.gz AnalysisPageServer_1.14.0.zip |
| StartedAt: 2018-10-16 18:41:34 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:48:25 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 411.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/AnalysisPageServer_1.14.0.tar.gz && rm -rf AnalysisPageServer.buildbin-libdir && mkdir AnalysisPageServer.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AnalysisPageServer.buildbin-libdir AnalysisPageServer_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL AnalysisPageServer_1.14.0.zip && rm AnalysisPageServer_1.14.0.tar.gz AnalysisPageServer_1.14.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
44 16.6M 44 7680k 0 0 59.4M 0 --:--:-- --:--:-- --:--:-- 62.5M
100 16.6M 100 16.6M 0 0 78.9M 0 --:--:-- --:--:-- --:--:-- 81.4M
install for i386
* installing *source* package 'AnalysisPageServer' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c AnalysisPageSVG.cpp -o AnalysisPageSVG.o
AnalysisPageSVG.cpp: In function 'int matchPlotPoints(XMLElementList, std::deque<double>, std::deque<double>, double, int, int)':
AnalysisPageSVG.cpp:154:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(n != y.size()) throw "x and y have different lengths";
^
AnalysisPageSVG.cpp:157:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(els.size() < start + n) {
^
AnalysisPageSVG.cpp:194:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i = 0; i < x.size(); i++) {
^
AnalysisPageSVG.cpp:210:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i = 0; i < els_x.size(); i++) {
^
AnalysisPageSVG.cpp:215:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i = 0; i < els_y.size(); i++) {
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c R_init_AnalysisPageServer.cpp -o R_init_AnalysisPageServer.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c SearchReplace2.cpp -o SearchReplace2.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c catch.c -o catch.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c cor.cpp -o cor.o
cor.cpp: In function 'double basic_cor(const std::deque<double>&, const std::deque<double>&)':
cor.cpp:24:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(n != y.size()) throw "different sizes";
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c tinyxml2.cpp -o tinyxml2.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o AnalysisPageServer.dll tmp.def AnalysisPageSVG.o R_init_AnalysisPageServer.o SearchReplace2.o catch.o cor.o tinyxml2.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
While loading AnalysisPageServer: urlEncode not found, providing a pure R implementation
While loading AnalysisPageServer: urlDecode not found, providing a pure R implementation
** help
*** installing help indices
converting help for package 'AnalysisPageServer'
finding HTML links ... done
add.event html
add.event.handler html
analysis.link html
analysis.page.link html
analysis.page.of.current.app html
annotate.analysis.page.svg html
annotate.data.frame html
apache.httpd.conf html
aps.dataset.divs html
aps.one.dataset.div html
aps.urlEncode html
array.param html
autosignal.on.bloated.memory html
bind.memory.checker html
bool.param html
build.service html
check.memory html
check.same.svgs html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpesaC2l/R.INSTALL8c07e893cb4/AnalysisPageServer/man/check.same.svgs.Rd:17: file link 'checkEquals' in package 'RUnit' does not exist and so has been treated as a topic
check.signal html
checkPackageInstalled html
checkRookForkForVignettes html
clear.event.handlers html
client.ip html
combobox.param html
compound.param html
config.js html
copy.front.end html
current.app html
custom.body.attr html
custom.body.html html
custom.html.headers html
data.frame.to.json html
data.frame.to.list html
default.param html
default.param.set html
default.service.paramset html
default.stylesheets html
dieIfWindows html
dies.ok html
embed.APS.dataset html
encode.datanode html
eval.within.time html
event.names html
execute.handler html
file.param html
filterWidget html
get.APS.outdir html
get.page html
getTraceback html
has.event html
has.page html
ignore.lots.of.stuff html
is.registry html
kill.process html
known.param.sizes html
lives.ok html
make.standard.ids html
messageSectionName html
new.FastRWeb.analysis.page.run html
new.analysis.page html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpesaC2l/R.INSTALL8c07e893cb4/AnalysisPageServer/man/new.analysis.page.Rd:133: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
new.datanode.array html
new.datanode.html html
new.datanode.plot html
new.datanode.simple html
new.datanode.table html
new.event.registry html
new.registry html
new.response html
new.rook.analysis.page.app html
pages html
param.set html
paramSetToJSON html
persistent.param.dependencies html
persistent.params html
platformIsWindows html
protect.rapache.memory html
rapache.app.from.registry html
rapache.trig.app html
register.page html
remove.event html
remove.old.files html
requestEnv html
reset.APS.outdir html
rook.analysis.page.server.landing.page
html
search.replace html
select.param html
service.link html
set.APS.outdir html
setup.APS.knitr html
simple.param html
sine.handler html
slider.param html
startRookAnalysisPageServer html
static.analysis.page html
static.analysis.page.query.string html
test.package html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpesaC2l/R.INSTALL8c07e893cb4/AnalysisPageServer/man/test.package.Rd:26: file link 'runTestSuite' in package 'RUnit' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpesaC2l/R.INSTALL8c07e893cb4/AnalysisPageServer/man/test.package.Rd:26: file link 'require' in package 'base' does not exist and so has been treated as a topic
trig.registry html
trigger.event html
tryKeepConditions html
tryKeepTraceback html
uniquify.ids.in.svg.files html
urlDecode html
urlEncode html
validate.array.param.value html
validate.bool.param.value html
validate.combobox.param.value html
validate.compound.param.value html
validate.file.param.value html
validate.labeled.param.value html
validate.param.list html
validate.param.value html
validate.select.param.value html
validate.text.param.value html
vwc.conditions html
vwc.error html
vwc.error.condition html
vwc.error.traceback html
vwc.is.error html
vwc.messages html
vwc.messages.conditions html
vwc.messages.tracebacks html
vwc.n html
vwc.n.messages html
vwc.n.warnings html
vwc.tracebacks html
vwc.value html
vwc.warnings html
vwc.warnings.conditions html
vwc.warnings.tracebacks html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'AnalysisPageServer' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c AnalysisPageSVG.cpp -o AnalysisPageSVG.o
AnalysisPageSVG.cpp: In function 'int matchPlotPoints(XMLElementList, std::deque<double>, std::deque<double>, double, int, int)':
AnalysisPageSVG.cpp:154:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(n != y.size()) throw "x and y have different lengths";
^
AnalysisPageSVG.cpp:157:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(els.size() < start + n) {
^
AnalysisPageSVG.cpp:194:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i = 0; i < x.size(); i++) {
^
AnalysisPageSVG.cpp:210:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i = 0; i < els_x.size(); i++) {
^
AnalysisPageSVG.cpp:215:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i = 0; i < els_y.size(); i++) {
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c R_init_AnalysisPageServer.cpp -o R_init_AnalysisPageServer.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c SearchReplace2.cpp -o SearchReplace2.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c catch.c -o catch.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c cor.cpp -o cor.o
cor.cpp: In function 'double basic_cor(const std::deque<double>&, const std::deque<double>&)':
cor.cpp:24:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(n != y.size()) throw "different sizes";
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c tinyxml2.cpp -o tinyxml2.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o AnalysisPageServer.dll tmp.def AnalysisPageSVG.o R_init_AnalysisPageServer.o SearchReplace2.o catch.o cor.o tinyxml2.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AnalysisPageServer' as AnalysisPageServer_1.14.0.zip
* DONE (AnalysisPageServer)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'AnalysisPageServer' successfully unpacked and MD5 sums checked
In R CMD INSTALL