Back to Multiple platform build/check report for BioC 3.6 experimental data

CHECK report for geneLenDataBase on malbec1

This page was generated on 2018-04-12 12:49:10 -0400 (Thu, 12 Apr 2018).

Package 118/326HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.14.0
Nadia Davidson , Anthony Hawkins
Snapshot Date: 2018-04-12 07:35:06 -0400 (Thu, 12 Apr 2018)
URL: https://git.bioconductor.org/packages/geneLenDataBase
Branch: RELEASE_3_6
Last Commit: b456b3f
Last Changed Date: 2017-10-30 11:58:23 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: geneLenDataBase
Version: 1.14.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.14.0.tar.gz
StartedAt: 2018-04-12 10:02:42 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 10:07:37 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 295.6 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
supportedGeneIDs 0.356  0.004   5.002
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0760.0120.091
anoCar1.genscan.LENGTH0.0680.0280.098
anoCar1.xenoRefGene.LENGTH1.3880.0041.392
anoGam1.ensGene.LENGTH0.1120.0080.122
anoGam1.geneid.LENGTH0.0800.0200.097
anoGam1.genscan.LENGTH0.0360.0440.083
apiMel1.genscan.LENGTH0.0320.0360.070
apiMel2.ensGene.LENGTH0.1320.0240.154
apiMel2.geneid.LENGTH0.0600.0360.096
apiMel2.genscan.LENGTH0.0400.0200.061
aplCal1.xenoRefGene.LENGTH0.8280.0000.828
bosTau2.geneSymbol.LENGTH0.0520.0240.079
bosTau2.geneid.LENGTH0.2120.0000.212
bosTau2.genscan.LENGTH0.0840.0360.119
bosTau2.refGene.LENGTH0.0600.0160.078
bosTau2.sgpGene.LENGTH0.1040.0000.103
bosTau3.ensGene.LENGTH0.1840.0120.197
bosTau3.geneSymbol.LENGTH0.0520.0160.065
bosTau3.geneid.LENGTH0.1120.0120.124
bosTau3.genscan.LENGTH0.1280.0120.142
bosTau3.refGene.LENGTH0.0480.0240.070
bosTau3.sgpGene.LENGTH0.1040.0360.142
bosTau4.ensGene.LENGTH0.1400.0280.171
bosTau4.geneSymbol.LENGTH0.0440.0200.063
bosTau4.genscan.LENGTH0.0680.0040.074
bosTau4.nscanGene.LENGTH0.0280.0280.056
bosTau4.refGene.LENGTH0.0360.0240.062
braFlo1.xenoRefGene.LENGTH0.4200.0040.425
caeJap1.xenoRefGene.LENGTH0.4920.0000.495
caePb1.xenoRefGene.LENGTH0.5400.0000.538
caePb2.xenoRefGene.LENGTH0.6200.0040.623
caeRem2.xenoRefGene.LENGTH0.5120.0040.515
caeRem3.xenoRefGene.LENGTH0.4480.0000.448
calJac1.genscan.LENGTH0.1440.0360.181
calJac1.nscanGene.LENGTH0.1080.0000.108
calJac1.xenoRefGene.LENGTH0.8480.0040.852
canFam1.ensGene.LENGTH0.1160.0000.117
canFam1.geneSymbol.LENGTH0.0080.0040.009
canFam1.genscan.LENGTH0.5880.0040.594
canFam1.nscanGene.LENGTH0.0560.0040.058
canFam1.refGene.LENGTH0.0080.0000.009
canFam1.xenoRefGene.LENGTH0.6960.0000.694
canFam2.ensGene.LENGTH0.1160.0240.142
canFam2.geneSymbol.LENGTH0.0040.0040.009
canFam2.genscan.LENGTH0.0640.0040.067
canFam2.nscanGene.LENGTH0.0720.0000.074
canFam2.refGene.LENGTH0.0080.0000.009
canFam2.xenoRefGene.LENGTH0.5800.0000.579
cavPor3.ensGene.LENGTH0.0920.0080.100
cavPor3.genscan.LENGTH0.1560.0040.159
cavPor3.nscanGene.LENGTH0.0720.0040.077
cavPor3.xenoRefGene.LENGTH0.5680.0000.567
cb1.xenoRefGene.LENGTH0.3960.0000.394
cb3.xenoRefGene.LENGTH0.3920.0000.391
ce2.geneSymbol.LENGTH0.1400.0520.192
ce2.geneid.LENGTH0.0600.0000.058
ce2.refGene.LENGTH0.0880.0440.135
ce4.geneSymbol.LENGTH0.0880.0560.143
ce4.refGene.LENGTH0.0840.0560.140
ce4.xenoRefGene.LENGTH0.0720.0000.074
ce6.ensGene.LENGTH0.0920.0160.107
ce6.geneSymbol.LENGTH0.1000.0360.134
ce6.refGene.LENGTH0.0840.0600.143
ce6.xenoRefGene.LENGTH0.0720.0000.071
ci1.geneSymbol.LENGTH0.0040.0040.007
ci1.refGene.LENGTH0.0040.0040.008
ci1.xenoRefGene.LENGTH0.1680.0000.166
ci2.ensGene.LENGTH0.0720.0000.071
ci2.geneSymbol.LENGTH0.0040.0040.008
ci2.refGene.LENGTH0.0080.0000.008
ci2.xenoRefGene.LENGTH0.4040.0000.406
danRer3.ensGene.LENGTH0.1320.0440.176
danRer3.geneSymbol.LENGTH0.0960.0240.123
danRer3.refGene.LENGTH0.0760.0320.109
danRer4.ensGene.LENGTH0.1320.0000.134
danRer4.geneSymbol.LENGTH0.0760.0320.109
danRer4.genscan.LENGTH0.0680.0000.069
danRer4.nscanGene.LENGTH0.1160.0120.129
danRer4.refGene.LENGTH0.0880.0280.116
danRer5.ensGene.LENGTH0.120.000.12
danRer5.geneSymbol.LENGTH0.0640.0320.097
danRer5.refGene.LENGTH0.0560.0360.095
danRer5.vegaGene.LENGTH0.0480.0480.095
danRer5.vegaPseudoGene.LENGTH0.0040.0000.004
danRer6.ensGene.LENGTH0.1520.0280.180
danRer6.geneSymbol.LENGTH0.0680.0360.106
danRer6.refGene.LENGTH0.0640.0360.103
danRer6.xenoRefGene.LENGTH0.5800.0000.583
dm1.geneSymbol.LENGTH0.0880.0560.143
dm1.genscan.LENGTH0.1760.0320.210
dm1.refGene.LENGTH0.0840.0520.134
dm2.geneSymbol.LENGTH0.0960.0480.146
dm2.geneid.LENGTH0.0560.0240.080
dm2.genscan.LENGTH0.0480.0040.054
dm2.nscanGene.LENGTH0.1120.0000.113
dm2.refGene.LENGTH0.0920.0440.136
dm3.geneSymbol.LENGTH0.0640.0000.067
dm3.nscanPasaGene.LENGTH0.2360.0280.264
dm3.refGene.LENGTH0.0640.0000.067
dp2.genscan.LENGTH0.0440.0160.057
dp2.xenoRefGene.LENGTH0.2320.0080.241
dp3.geneid.LENGTH0.5520.0440.596
dp3.genscan.LENGTH0.0240.0320.054
dp3.xenoRefGene.LENGTH0.1360.0320.170
droAna1.geneid.LENGTH0.0680.0040.070
droAna1.genscan.LENGTH0.0200.0040.022
droAna1.xenoRefGene.LENGTH0.1920.0040.197
droAna2.genscan.LENGTH0.0400.0040.044
droAna2.xenoRefGene.LENGTH0.2280.0080.233
droEre1.genscan.LENGTH0.0320.0200.051
droEre1.xenoRefGene.LENGTH0.2400.0080.249
droGri1.genscan.LENGTH0.0440.0240.067
droGri1.xenoRefGene.LENGTH0.2520.0040.258
droMoj1.geneid.LENGTH0.1120.0160.128
droMoj1.genscan.LENGTH0.0480.0000.050
droMoj1.xenoRefGene.LENGTH0.1960.0200.215
droMoj2.genscan.LENGTH0.0480.0160.065
droMoj2.xenoRefGene.LENGTH0.2920.0120.305
droPer1.genscan.LENGTH0.0400.0320.074
droPer1.xenoRefGene.LENGTH0.2000.0160.216
droSec1.genscan.LENGTH0.0360.0200.056
droSec1.xenoRefGene.LENGTH0.2880.0000.286
droSim1.geneid.LENGTH0.0520.0200.073
droSim1.genscan.LENGTH0.0280.0160.042
droSim1.xenoRefGene.LENGTH0.1840.0000.185
droVir1.geneid.LENGTH0.0880.0040.091
droVir1.genscan.LENGTH0.0560.0160.069
droVir1.xenoRefGene.LENGTH0.7080.0000.709
droVir2.genscan.LENGTH0.0560.0120.066
droVir2.xenoRefGene.LENGTH0.2720.0000.274
droYak1.geneid.LENGTH0.0680.0360.101
droYak1.genscan.LENGTH0.0400.0160.055
droYak1.xenoRefGene.LENGTH0.1640.0040.169
droYak2.genscan.LENGTH0.0400.0120.050
droYak2.xenoRefGene.LENGTH0.1880.0000.188
equCab1.geneSymbol.LENGTH0.0080.0000.007
equCab1.geneid.LENGTH0.0840.0080.093
equCab1.nscanGene.LENGTH0.0800.0240.104
equCab1.refGene.LENGTH0.0080.0000.007
equCab1.sgpGene.LENGTH0.0600.0080.067
equCab2.ensGene.LENGTH0.0800.0240.104
equCab2.geneSymbol.LENGTH0.0080.0040.010
equCab2.nscanGene.LENGTH0.0520.0400.092
equCab2.refGene.LENGTH0.0040.0080.010
equCab2.xenoRefGene.LENGTH0.3880.0040.393
felCat3.ensGene.LENGTH0.1320.0000.132
felCat3.geneSymbol.LENGTH0.0040.0000.005
felCat3.geneid.LENGTH0.8200.0040.824
felCat3.genscan.LENGTH0.0880.0240.112
felCat3.nscanGene.LENGTH0.0800.0200.101
felCat3.refGene.LENGTH0.0000.0040.005
felCat3.sgpGene.LENGTH0.1160.0000.115
felCat3.xenoRefGene.LENGTH1.0320.0041.035
fr1.ensGene.LENGTH0.0720.0120.087
fr1.genscan.LENGTH0.0440.0040.049
fr2.ensGene.LENGTH0.5840.0200.602
galGal2.ensGene.LENGTH0.0520.0000.054
galGal2.geneSymbol.LENGTH0.0160.0120.026
galGal2.geneid.LENGTH0.0440.0240.066
galGal2.genscan.LENGTH0.0560.0320.089
galGal2.refGene.LENGTH0.0160.0120.028
galGal2.sgpGene.LENGTH0.0720.0240.096
galGal3.ensGene.LENGTH0.0680.0120.081
galGal3.geneSymbol.LENGTH0.0120.0120.028
galGal3.genscan.LENGTH0.0640.0240.089
galGal3.nscanGene.LENGTH0.0600.0000.061
galGal3.refGene.LENGTH0.0160.0120.029
galGal3.xenoRefGene.LENGTH0.4080.0000.410
gasAcu1.ensGene.LENGTH0.0960.0120.105
gasAcu1.nscanGene.LENGTH0.0960.0280.123
hg16.acembly.LENGTH0.3160.0000.316
hg16.ensGene.LENGTH0.1760.0120.189
hg16.exoniphy.LENGTH0.2040.0000.203
hg16.geneSymbol.LENGTH0.1040.0040.106
hg16.geneid.LENGTH0.0640.0360.098
hg16.genscan.LENGTH0.0520.0160.069
hg16.knownGene.LENGTH0.1240.0200.143
hg16.refGene.LENGTH0.0920.0080.100
hg16.sgpGene.LENGTH0.0560.0040.061
hg17.acembly.LENGTH0.5320.0040.539
hg17.acescan.LENGTH0.0120.0040.017
hg17.ccdsGene.LENGTH0.0320.0160.047
hg17.ensGene.LENGTH0.1160.0440.161
hg17.exoniphy.LENGTH0.6720.0040.680
hg17.geneSymbol.LENGTH0.0920.0080.102
hg17.geneid.LENGTH0.0840.0040.088
hg17.genscan.LENGTH0.0600.0120.070
hg17.knownGene.LENGTH0.1040.0160.121
hg17.refGene.LENGTH0.1040.0080.112
hg17.sgpGene.LENGTH0.0840.0120.099
hg17.vegaGene.LENGTH0.060.020.08
hg17.vegaPseudoGene.LENGTH0.0200.0120.031
hg17.xenoRefGene.LENGTH0.2160.0000.215
hg18.acembly.LENGTH0.5720.0000.572
hg18.acescan.LENGTH0.0200.0000.019
hg18.ccdsGene.LENGTH0.0480.0240.071
hg18.ensGene.LENGTH0.8520.0080.859
hg18.exoniphy.LENGTH0.3840.0040.390
hg18.geneSymbol.LENGTH0.0920.0120.103
hg18.geneid.LENGTH0.0760.0200.095
hg18.genscan.LENGTH0.0720.0080.078
hg18.knownGene.LENGTH0.1600.0120.172
hg18.knownGeneOld3.LENGTH0.0760.0240.100
hg18.refGene.LENGTH0.1040.0040.106
hg18.sgpGene.LENGTH0.0840.0160.101
hg18.sibGene.LENGTH0.4560.0080.463
hg18.xenoRefGene.LENGTH0.3440.0200.366
hg19.ccdsGene.LENGTH0.0600.0160.076
hg19.ensGene.LENGTH0.3440.0080.354
hg19.exoniphy.LENGTH0.4640.0040.469
hg19.geneSymbol.LENGTH0.0960.0200.118
hg19.knownGene.LENGTH0.4040.0240.426
hg19.nscanGene.LENGTH0.1520.0000.151
hg19.refGene.LENGTH0.1280.0120.139
hg19.xenoRefGene.LENGTH0.3560.0000.358
loxAfr3.xenoRefGene.LENGTH0.8680.0000.865
mm7.ensGene.LENGTH0.1160.0000.118
mm7.geneSymbol.LENGTH0.0960.0000.094
mm7.geneid.LENGTH0.2320.0080.240
mm7.genscan.LENGTH0.0720.0040.073
mm7.knownGene.LENGTH0.1080.0000.109
mm7.refGene.LENGTH0.0840.0000.084
mm7.sgpGene.LENGTH0.0760.0320.110
mm7.xenoRefGene.LENGTH0.3680.0040.371
mm8.ccdsGene.LENGTH0.0320.0120.044
mm8.ensGene.LENGTH0.6880.0200.708
mm8.geneSymbol.LENGTH0.0840.0000.083
mm8.geneid.LENGTH0.0840.0200.104
mm8.genscan.LENGTH0.0560.0040.059
mm8.knownGene.LENGTH0.0920.0040.095
mm8.nscanGene.LENGTH0.0560.0000.054
mm8.refGene.LENGTH0.0760.0000.076
mm8.sgpGene.LENGTH0.0840.0160.099
mm8.sibGene.LENGTH0.2440.0000.244
mm8.xenoRefGene.LENGTH0.4080.0360.444
mm9.acembly.LENGTH0.3440.0000.347
mm9.ccdsGene.LENGTH0.0400.0160.056
mm9.ensGene.LENGTH0.3280.0160.345
mm9.exoniphy.LENGTH0.4000.0040.404
mm9.geneSymbol.LENGTH0.0840.0000.083
mm9.geneid.LENGTH0.1000.0240.122
mm9.genscan.LENGTH0.0680.0040.072
mm9.knownGene.LENGTH0.1320.0360.168
mm9.nscanGene.LENGTH0.1600.0000.161
mm9.refGene.LENGTH0.0960.0000.094
mm9.sgpGene.LENGTH0.1000.0200.121
mm9.xenoRefGene.LENGTH0.4040.0280.434
monDom1.genscan.LENGTH0.0720.0080.079
monDom4.ensGene.LENGTH0.0920.0080.098
monDom4.geneSymbol.LENGTH0.0040.0000.005
monDom4.genscan.LENGTH0.6080.0320.640
monDom4.nscanGene.LENGTH0.0760.0280.104
monDom4.refGene.LENGTH0.0040.0000.005
monDom4.xenoRefGene.LENGTH0.3440.0040.346
monDom5.ensGene.LENGTH0.0880.0000.089
monDom5.geneSymbol.LENGTH0.0040.0040.005
monDom5.genscan.LENGTH0.0440.0000.046
monDom5.nscanGene.LENGTH0.0920.0000.089
monDom5.refGene.LENGTH0.0000.0040.005
monDom5.xenoRefGene.LENGTH0.5560.0000.553
ornAna1.ensGene.LENGTH0.1040.0200.125
ornAna1.geneSymbol.LENGTH0.0040.0000.003
ornAna1.refGene.LENGTH0.0040.0000.002
ornAna1.xenoRefGene.LENGTH0.5160.0000.517
oryLat2.ensGene.LENGTH0.0760.0120.087
oryLat2.geneSymbol.LENGTH0.0080.0000.007
oryLat2.refGene.LENGTH0.0040.0000.005
oryLat2.xenoRefGene.LENGTH0.5680.0000.568
panTro1.ensGene.LENGTH0.1040.0000.103
panTro1.geneid.LENGTH0.0840.0120.095
panTro1.genscan.LENGTH0.0600.0000.059
panTro1.xenoRefGene.LENGTH0.1280.0160.143
panTro2.ensGene.LENGTH0.1080.0120.120
panTro2.geneSymbol.LENGTH0.1200.0040.122
panTro2.genscan.LENGTH0.0560.0000.058
panTro2.nscanGene.LENGTH0.0520.0000.055
panTro2.refGene.LENGTH0.0840.0160.101
panTro2.xenoRefGene.LENGTH0.5520.0080.560
petMar1.xenoRefGene.LENGTH0.2680.0080.277
ponAbe2.ensGene.LENGTH0.0880.0280.113
ponAbe2.geneSymbol.LENGTH0.0200.0000.022
ponAbe2.genscan.LENGTH0.0600.0000.058
ponAbe2.nscanGene.LENGTH0.0560.0000.057
ponAbe2.refGene.LENGTH0.0040.0160.020
ponAbe2.xenoRefGene.LENGTH0.8640.0000.864
priPac1.xenoRefGene.LENGTH0.3760.0000.376
rheMac2.ensGene.LENGTH0.1360.0120.149
rheMac2.geneSymbol.LENGTH0.0040.0040.008
rheMac2.geneid.LENGTH0.0720.0080.083
rheMac2.nscanGene.LENGTH0.0640.0000.062
rheMac2.refGene.LENGTH0.0080.0000.009
rheMac2.sgpGene.LENGTH0.0800.0080.089
rheMac2.xenoRefGene.LENGTH0.5640.0000.565
rn3.ensGene.LENGTH0.1280.0160.145
rn3.geneSymbol.LENGTH0.0760.0240.101
rn3.geneid.LENGTH0.0520.0000.054
rn3.genscan.LENGTH0.2080.0040.212
rn3.knownGene.LENGTH0.0280.0200.048
rn3.nscanGene.LENGTH0.0600.0000.061
rn3.refGene.LENGTH0.0800.0240.102
rn3.sgpGene.LENGTH0.0680.0000.066
rn3.xenoRefGene.LENGTH0.5680.0040.574
rn4.ensGene.LENGTH0.2040.0040.210
rn4.geneSymbol.LENGTH0.0880.0440.129
rn4.geneid.LENGTH0.1320.0320.165
rn4.genscan.LENGTH0.1600.0040.168
rn4.knownGene.LENGTH0.0520.0080.057
rn4.nscanGene.LENGTH0.1080.0320.140
rn4.refGene.LENGTH0.0880.0240.111
rn4.sgpGene.LENGTH0.1080.0160.123
rn4.xenoRefGene.LENGTH0.3600.0000.359
sacCer1.ensGene.LENGTH0.0240.0160.038
sacCer2.ensGene.LENGTH0.0160.0200.039
strPur1.geneSymbol.LENGTH0.0080.0000.007
strPur1.genscan.LENGTH0.0560.0040.062
strPur1.refGene.LENGTH0.0000.0040.007
strPur1.xenoRefGene.LENGTH0.6000.0000.604
strPur2.geneSymbol.LENGTH0.0000.0040.006
strPur2.genscan.LENGTH0.1120.0000.109
strPur2.refGene.LENGTH0.0080.0000.007
strPur2.xenoRefGene.LENGTH1.0920.0001.096
supportedGeneIDs0.3560.0045.002
supportedGenomes0.1560.0080.877
taeGut1.ensGene.LENGTH0.0600.0040.065
taeGut1.geneSymbol.LENGTH0.0000.0040.003
taeGut1.genscan.LENGTH0.0440.0200.061
taeGut1.nscanGene.LENGTH0.0360.0160.054
taeGut1.refGene.LENGTH0.0000.0000.003
taeGut1.xenoRefGene.LENGTH0.4120.0000.412
tetNig1.ensGene.LENGTH0.0840.0320.114
tetNig1.geneid.LENGTH0.0720.0120.081
tetNig1.genscan.LENGTH0.0440.0480.092
tetNig1.nscanGene.LENGTH0.0840.0000.083
tetNig2.ensGene.LENGTH0.0760.0120.086
unfactor0.0040.0000.004
xenTro1.genscan.LENGTH0.0760.0040.078
xenTro2.ensGene.LENGTH0.1120.0120.127
xenTro2.geneSymbol.LENGTH0.0440.0160.063
xenTro2.genscan.LENGTH0.1680.0160.183
xenTro2.refGene.LENGTH0.0400.0200.058