Jianhong Ou
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/trackViewer |
| Branch: RELEASE_3_6 |
| Last Commit: 4310230 |
| Last Changed Date: 2018-02-12 12:16:42 -0400 (Mon, 12 Feb 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:23:45 -0400 (Thu, 12 Apr 2018).
| Package 1412/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| trackViewer 1.14.1 Jianhong Ou
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: trackViewer |
| Version: 1.14.1 |
| Command: rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/trackViewer_1.14.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=trackViewer.buildbin-libdir --merge-multiarch trackViewer_1.14.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL trackViewer_1.14.1.zip && rm trackViewer_1.14.1.tar.gz trackViewer_1.14.1.zip |
| StartedAt: 2018-04-11 18:56:28 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:58:32 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 124.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/trackViewer_1.14.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=trackViewer.buildbin-libdir --merge-multiarch trackViewer_1.14.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL trackViewer_1.14.1.zip && rm trackViewer_1.14.1.tar.gz trackViewer_1.14.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 207k 100 207k 0 0 1233k 0 --:--:-- --:--:-- --:--:-- 1258k
install for i386
* installing *source* package 'trackViewer' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'trackViewer'
finding HTML links ... done
GRoperator html
addArrowMark html
addGuideLine html
browseTracks html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/browseTracks.Rd:14: missing file link 'GRanges'
coverageGR html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/coverageGR.Rd:8: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/coverageGR.Rd:9: missing file link 'GAlignments'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/coverageGR.Rd:9: missing file link 'GAlignmentPairs'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/coverageGR.Rd:25: missing file link 'coverage'
dandelion.plot html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/dandelion.plot.Rd:19: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/dandelion.plot.Rd:19: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/dandelion.plot.Rd:23: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/dandelion.plot.Rd:23: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/dandelion.plot.Rd:26: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/dandelion.plot.Rd:26: missing file link 'GRangesList'
geneModelFromTxdb html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/geneModelFromTxdb.Rd:17: missing file link 'TxDb'
getCurTrackViewport html
ideogramPlot html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/ideogramPlot.Rd:33: missing file link 'GRangesList'
importBam html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/importBam.Rd:15: missing file link 'GRanges'
importData html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/importData.Rd:17: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/importData.Rd:21: missing file link 'RleList'
importScore html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/importScore.Rd:19: missing file link 'GRanges'
loadIdeogram html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/loadIdeogram.Rd:20: missing file link 'Ranges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/loadIdeogram.Rd:23: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/loadIdeogram.Rd:27: missing file link 'GRanges'
lolliplot html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/lolliplot.Rd:23: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/lolliplot.Rd:23: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/lolliplot.Rd:24: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/lolliplot.Rd:28: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/lolliplot.Rd:28: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/lolliplot.Rd:29: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/lolliplot.Rd:33: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/lolliplot.Rd:33: missing file link 'GRangesList'
optimizeStyle html
parse2GRanges html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/parse2GRanges.Rd:19: missing file link 'GRanges'
parseWIG html
plotGRanges html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/plotGRanges.Rd:16: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/plotGRanges.Rd:17: missing file link 'GRanges'
pos html
track html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/track.rd:29: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/track.rd:31: missing file link 'GRanges'
trackList html
trackStyle html
trackViewer-package html
trackViewerStyle html
viewTracks html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpS8FKoV/R.INSTALL95032972414/trackViewer/man/viewTracks.Rd:21: missing file link 'GRanges'
xscale html
yaxisStyle html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'trackViewer' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'trackViewer' as trackViewer_1.14.1.zip
* DONE (trackViewer)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'trackViewer' successfully unpacked and MD5 sums checked
In R CMD INSTALL