Jeffrey T. Leek
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/sva |
| Branch: RELEASE_3_6 |
| Last Commit: 3cc5e75 |
| Last Changed Date: 2017-10-30 12:39:36 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:35:03 -0400 (Thu, 12 Apr 2018).
| Package 1370/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| sva 3.26.0 Jeffrey T. Leek
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: sva |
| Version: 3.26.0 |
| Command: rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh sva_3.26.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R sva.buildbin-libdir |
| StartedAt: 2018-04-12 12:19:03 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 12:19:22 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 19.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: sva_3.26.0.tgz |
| PackageFileSize: 444.1 KiB |
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### Running command:
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### rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh sva_3.26.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R sva.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=sva.buildbin-libdir sva_3.26.0.tar.gz'
>>>>>>>
* installing *source* package ‘sva’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c sva.c -o sva.o
sva.c:29:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
NULL
^˜˜˜
{ }
/usr/local/clang4/bin/../lib/clang/4.0.0/include/stddef.h:105:16: note: expanded from macro 'NULL'
# define NULL ((void*)0)
^˜˜˜˜˜˜˜˜˜
1 warning generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o sva.so sva.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/sva.buildbin-libdir/sva/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (sva)
>>>>>>>
>>>>>>> FIXING LINKS FOR sva.buildbin-libdir/sva/libs//sva.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "sva.buildbin-libdir/sva/libs//sva.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "sva.buildbin-libdir/sva/libs//sva.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "sva.buildbin-libdir/sva/libs//sva.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "sva.buildbin-libdir/sva/libs//sva.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "sva.buildbin-libdir/sva/libs//sva.so"