Elena Grassi
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/roar |
| Branch: RELEASE_3_6 |
| Last Commit: 71d9e64 |
| Last Changed Date: 2017-10-30 12:40:10 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:11:47 -0400 (Thu, 12 Apr 2018).
| Package 1200/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| roar 1.14.0 Elena Grassi
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: roar |
| Version: 1.14.0 |
| Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings roar_1.14.0.tar.gz |
| StartedAt: 2018-04-12 02:32:53 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 02:35:33 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 159.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: roar.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings roar_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/roar.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘roar/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘roar’ version ‘1.14.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘roar’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
roar.Rcheck/00install.out
* installing *source* package ‘roar’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (roar)
roar.Rcheck/tests/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(roar)
>
> test_check("roar")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 143 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
17.836 0.180 18.039
roar.Rcheck/roar-Ex.timings
| name | user | system | elapsed | |
| RoarDataset-class | 0.004 | 0.000 | 0.002 | |
| RoarDataset-constructor | 0.808 | 0.000 | 0.811 | |
| RoarDatasetFromFiles-constructor | 0 | 0 | 0 | |
| RoarDatasetMultipleAPA-class | 0.000 | 0.000 | 0.001 | |
| RoarDatasetMultipleAPA-constructor | 0.588 | 0.012 | 0.599 | |
| RoarDatasetMultipleAPAFromFiles-constructor | 0 | 0 | 0 | |
| computePairedPvals-method | 1.088 | 0.004 | 1.096 | |
| computePvals-method | 0.520 | 0.000 | 0.524 | |
| computeRoars-method | 0.400 | 0.004 | 0.406 | |
| countPrePost-method | 0.420 | 0.008 | 0.430 | |
| countResults-method | 0.448 | 0.004 | 0.454 | |
| fpkmResults-method | 0.460 | 0.000 | 0.461 | |
| pvalueCorrectFilter-method | 0.460 | 0.000 | 0.461 | |
| pvalueFilter-method | 0.412 | 0.004 | 0.415 | |
| standardFilter-method | 0.416 | 0.000 | 0.418 | |
| totalResults-method | 0.396 | 0.008 | 0.405 | |