Package: rnaSeqMap

Version: 2.36.0

Command: rm -rf rnaSeqMap.buildbin-libdir && mkdir rnaSeqMap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rnaSeqMap_2.36.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R rnaSeqMap.buildbin-libdir

StartedAt: 2018-04-12 12:09:57 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 12:10:15 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 17.8 seconds

RetCode: 0

Status:  OK

PackageFile: rnaSeqMap_2.36.0.tgz

PackageFileSize: 565.6 KiB

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf rnaSeqMap.buildbin-libdir && mkdir rnaSeqMap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rnaSeqMap_2.36.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R rnaSeqMap.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=rnaSeqMap.buildbin-libdir rnaSeqMap_2.36.0.tar.gz'
>>>>>>> 

* installing *source* package ‘rnaSeqMap’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rinit.c -o Rinit.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c gcoverage.c -o gcoverage.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ghistogram.c -o ghistogram.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c regionmining.c -o regionmining.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c splicingind.c -o splicingind.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rnaSeqMap.so Rinit.o gcoverage.o ghistogram.o regionmining.o splicingind.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/rnaSeqMap.buildbin-libdir/rnaSeqMap/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rnaSeqMap)


>>>>>>> 
>>>>>>> FIXING LINKS FOR rnaSeqMap.buildbin-libdir/rnaSeqMap/libs//rnaSeqMap.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs//rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs//rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs//rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs//rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs//rnaSeqMap.so"