Package: regionReport

Version: 1.12.2

Command: rm -rf regionReport.buildbin-libdir regionReport.Rcheck && mkdir regionReport.buildbin-libdir regionReport.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=regionReport.buildbin-libdir regionReport_1.12.2.tar.gz >regionReport.Rcheck\00install.out 2>&1 && cp regionReport.Rcheck\00install.out regionReport-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=regionReport.buildbin-libdir --install="check:regionReport-install.out" --force-multiarch --no-vignettes --timings regionReport_1.12.2.tar.gz

StartedAt: 2018-04-12 02:35:03 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 02:47:55 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 771.9 seconds

RetCode: 0

Status:  OK

CheckDir: regionReport.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf regionReport.buildbin-libdir regionReport.Rcheck && mkdir regionReport.buildbin-libdir regionReport.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=regionReport.buildbin-libdir regionReport_1.12.2.tar.gz >regionReport.Rcheck\00install.out 2>&1 && cp regionReport.Rcheck\00install.out regionReport-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=regionReport.buildbin-libdir --install="check:regionReport-install.out" --force-multiarch --no-vignettes --timings regionReport_1.12.2.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/regionReport.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'regionReport/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'regionReport' version '1.12.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'regionReport' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'DESeq2:::pvalueAdjustment'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
renderReport    87.22   4.33   94.59
DESeq2Report    33.32   1.58   40.87
derfinderReport 29.39   3.83   35.01
edgeReport      15.39   1.33   17.80
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
renderReport    126.56   5.54  133.36
DESeq2Report     41.34   1.66   44.72
derfinderReport  34.61   4.00   39.72
edgeReport       21.84   1.55   24.54
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/regionReport.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'regionReport' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'regionReport'
    finding HTML links ... done
    DESeq2Report                            html  
    derfinderReport                         html  
    edgeReport                              html  
    load_install                            html  
    regionReport-package                    html  
    renderReport                            html  
    with_wd                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'regionReport' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'regionReport' as regionReport_1.12.2.zip
* DONE (regionReport)
In R CMD INSTALL
In R CMD INSTALL