Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:44:07 -0400 (Thu, 12 Apr 2018).
Package 1117/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ramwas 1.2.0 Andrey A Shabalin
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | |||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK |
Package: ramwas |
Version: 1.2.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings ramwas_1.2.0.tar.gz |
StartedAt: 2018-04-12 08:17:22 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 08:20:48 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 206.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ramwas.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings ramwas_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/ramwas.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ramwas/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ramwas’ version ‘1.2.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ramwas’ can be installed ... OK * checking installed package size ... NOTE installed size is 6.5Mb sub-directories of 1Mb or more: doc 6.2Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.6-bioc/meat/ramwas.Rcheck/00check.log’ for details.
ramwas.Rcheck/00install.out
* installing *source* package ‘ramwas’ ... ** libs clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c rw_c_code.c -o rw_c_code.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ramwas.so rw_c_code.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.6-bioc/meat/ramwas.Rcheck/ramwas/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ramwas)
ramwas.Rcheck/ramwas-Ex.timings
name | user | system | elapsed | |
QCs | 0.062 | 0.003 | 0.067 | |
cachedRDSload | 0.661 | 0.001 | 0.695 | |
findBestNpvs | 0.002 | 0.000 | 0.002 | |
getCpGset | 4.581 | 0.136 | 4.919 | |
getDataByLocation | 0.000 | 0.000 | 0.001 | |
getTestsByLocation | 0.001 | 0.000 | 0.000 | |
injectSNPsMAF | 0.408 | 0.006 | 0.427 | |
insilicoFASTQ | 0.003 | 0.000 | 0.002 | |
isAbsolutePath | 0.001 | 0.000 | 0.001 | |
makefullpath | 0.001 | 0.000 | 0.002 | |
orthonormalizeCovariates | 0.028 | 0.000 | 0.029 | |
parameterDump | 0.025 | 0.001 | 0.027 | |
parameterPreprocess | 0.006 | 0.003 | 0.010 | |
parametersFromFile | 0.002 | 0.001 | 0.003 | |
pipeline | 0.003 | 0.000 | 0.003 | |
plotROC | 0.004 | 0.001 | 0.004 | |
processCommandLine | 0.003 | 0.000 | 0.002 | |
pvalue2qvalue | 0.001 | 0.000 | 0.001 | |
qqplotFast | 0.691 | 0.052 | 0.763 | |
ramwas0createArtificialData | 0.264 | 0.025 | 0.293 | |
ramwasAnnotateLocations | 0.285 | 0.012 | 3.808 | |
ramwasParameters | 0.000 | 0.000 | 0.001 | |
rowcolSumSq | 0.002 | 0.000 | 0.002 | |
testPhenotype | 0.080 | 0.001 | 0.081 | |