Zuguang Gu
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/rGREAT |
| Branch: RELEASE_3_6 |
| Last Commit: 2601608 |
| Last Changed Date: 2018-04-10 08:15:13 -0400 (Tue, 10 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:25:44 -0400 (Thu, 12 Apr 2018).
| Package 1169/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| rGREAT 1.11.1 Zuguang Gu
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ WARNINGS ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: rGREAT |
| Version: 1.11.1 |
| Command: rm -rf rGREAT.buildbin-libdir rGREAT.Rcheck && mkdir rGREAT.buildbin-libdir rGREAT.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rGREAT.buildbin-libdir rGREAT_1.11.1.tar.gz >rGREAT.Rcheck\00install.out 2>&1 && cp rGREAT.Rcheck\00install.out rGREAT-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=rGREAT.buildbin-libdir --install="check:rGREAT-install.out" --force-multiarch --no-vignettes --timings rGREAT_1.11.1.tar.gz |
| StartedAt: 2018-04-12 02:39:40 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 02:41:55 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 134.8 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: rGREAT.Rcheck |
| Warnings: 1 |
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### Running command:
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### rm -rf rGREAT.buildbin-libdir rGREAT.Rcheck && mkdir rGREAT.buildbin-libdir rGREAT.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rGREAT.buildbin-libdir rGREAT_1.11.1.tar.gz >rGREAT.Rcheck\00install.out 2>&1 && cp rGREAT.Rcheck\00install.out rGREAT-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=rGREAT.buildbin-libdir --install="check:rGREAT-install.out" --force-multiarch --no-vignettes --timings rGREAT_1.11.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/rGREAT.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rGREAT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rGREAT' version '1.11.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rGREAT' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpuUO21Y/R.INSTALL397844bb1018/rGREAT/man/plotRegionGeneAssociationGraphs-GreatJob-method.rd:39: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpuUO21Y/R.INSTALL397844bb1018/rGREAT/man/submitGreatJob.rd:26: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpuUO21Y/R.INSTALL397844bb1018/rGREAT/man/submitGreatJob.rd:27: missing file link 'GRanges'
See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/rGREAT.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
MIT
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
submitGreatJob 0.58 0.18 11.46
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
submitGreatJob 0.57 0.07 10.8
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'test-all.R'
OK
** running tests for arch 'x64' ...
Running 'test-all.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/rGREAT.Rcheck/00check.log'
for details.
rGREAT.Rcheck/00install.out
install for i386
* installing *source* package 'rGREAT' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'rGREAT'
finding HTML links ... done
GreatJob-class html
availableCategories-GreatJob-method html
availableOntologies-GreatJob-method html
getEnrichmentTables-GreatJob-method html
plotRegionGeneAssociationGraphs-GreatJob-method
html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpuUO21Y/R.INSTALL397844bb1018/rGREAT/man/plotRegionGeneAssociationGraphs-GreatJob-method.rd:39: missing file link 'GRanges'
submitGreatJob html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpuUO21Y/R.INSTALL397844bb1018/rGREAT/man/submitGreatJob.rd:26: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpuUO21Y/R.INSTALL397844bb1018/rGREAT/man/submitGreatJob.rd:27: missing file link 'GRanges'
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'rGREAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rGREAT' as rGREAT_1.11.1.zip
* DONE (rGREAT)
In R CMD INSTALL
In R CMD INSTALL
|
rGREAT.Rcheck/tests_i386/test-all.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(rGREAT)))
>
> test_check("rGREAT")
== testthat results ===========================================================
OK: 1 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
2.51 0.06 2.56
|
rGREAT.Rcheck/tests_x64/test-all.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(rGREAT)))
>
> test_check("rGREAT")
== testthat results ===========================================================
OK: 1 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
3.26 0.07 3.32
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rGREAT.Rcheck/examples_i386/rGREAT-Ex.timings
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rGREAT.Rcheck/examples_x64/rGREAT-Ex.timings
|