Back to Multiple platform build/check report for BioC 3.6
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

BUILD BIN report for phyloseq on tokay1

This page was generated on 2018-04-12 13:21:32 -0400 (Thu, 12 Apr 2018).

Package 1035/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phyloseq 1.22.3
Paul J. McMurdie
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/phyloseq
Branch: RELEASE_3_6
Last Commit: c695323
Last Changed Date: 2017-11-04 20:23:08 -0400 (Sat, 04 Nov 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: phyloseq
Version: 1.22.3
Command: cd phyloseq.buildbin-libdir/phyloseq && zip -r ../../phyloseq_1.22.3.zip . & cd ../..
StartedAt: 2018-04-12 04:56:44 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 04:57:15 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 31.0 seconds
RetCode: 0
Status:  OK  
PackageFile: phyloseq_1.22.3.zip
PackageFileSize: 7.789 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd phyloseq.buildbin-libdir/phyloseq && zip -r ../../phyloseq_1.22.3.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (332 bytes security) (deflated 47%)
  adding: data/ (372 bytes security) (stored 0%)
  adding: data/datalist (332 bytes security) (stored 0%)
  adding: data/enterotype.RData (332 bytes security) (deflated 0%)
  adding: data/esophagus.RData (332 bytes security) (stored 0%)
  adding: data/GlobalPatterns.RData (332 bytes security) (deflated 0%)
  adding: data/soilrep.RData (332 bytes security) (deflated 0%)
  adding: DESCRIPTION (332 bytes security) (deflated 50%)
  adding: doc/ (372 bytes security) (stored 0%)
  adding: doc/index.html (332 bytes security) (deflated 76%)
  adding: doc/phyloseq-analysis.html (332 bytes security) (deflated 51%)
  adding: doc/phyloseq-analysis.R (332 bytes security) (deflated 71%)
  adding: doc/phyloseq-analysis.Rmd (332 bytes security) (deflated 66%)
  adding: doc/phyloseq-basics.html (332 bytes security) (deflated 50%)
  adding: doc/phyloseq-basics.R (332 bytes security) (deflated 78%)
  adding: doc/phyloseq-basics.Rmd (332 bytes security) (deflated 65%)
  adding: doc/phyloseq-FAQ.html (332 bytes security) (deflated 61%)
  adding: doc/phyloseq-FAQ.R (332 bytes security) (deflated 64%)
  adding: doc/phyloseq-FAQ.Rmd (332 bytes security) (deflated 60%)
  adding: doc/phyloseq-mixture-models.html (332 bytes security) (deflated 66%)
  adding: doc/phyloseq-mixture-models.R (332 bytes security) (deflated 64%)
  adding: doc/phyloseq-mixture-models.Rmd (332 bytes security) (deflated 56%)
  adding: doc/Unweighted_UniFrac.RData (332 bytes security) (stored 0%)
  adding: extdata/ (372 bytes security) (stored 0%)
  adding: extdata/biom-refseq.fasta (332 bytes security) (deflated 71%)
  adding: extdata/biom-tree.phy (332 bytes security) (deflated 37%)
  adding: extdata/esophagus.fn.list.gz (332 bytes security) (deflated 0%)
  adding: extdata/esophagus.fn.shared.gz (332 bytes security) (deflated 36%)
  adding: extdata/esophagus.good.groups.gz (332 bytes security) (stored 0%)
  adding: extdata/esophagus.tree.gz (332 bytes security) (stored 0%)
  adding: extdata/gg13-5-73.tree.gz (332 bytes security) (stored 0%)
  adding: extdata/gp500-pycogent.py (332 bytes security) (deflated 67%)
  adding: extdata/gp500-uuf.csv (332 bytes security) (deflated 72%)
  adding: extdata/gp500-wuf.csv (332 bytes security) (deflated 72%)
  adding: extdata/gp500-wufu.csv (332 bytes security) (deflated 72%)
  adding: extdata/gp500test.env.txt (332 bytes security) (deflated 75%)
  adding: extdata/gp500test.tree (332 bytes security) (deflated 57%)
  adding: extdata/GP_otu_table_rand_short.txt.gz (332 bytes security) (stored 0%)
  adding: extdata/GP_tree_rand_short.newick.gz (332 bytes security) (stored 0%)
  adding: extdata/master_map.txt (332 bytes security) (deflated 61%)
  adding: extdata/min_dense_otu_table.biom (332 bytes security) (deflated 70%)
  adding: extdata/min_sparse_otu_table.biom (332 bytes security) (deflated 73%)
  adding: extdata/mothur_example.cons.taxonomy.gz (332 bytes security) (stored 0%)
  adding: extdata/qiime500-refseq.fasta (332 bytes security) (deflated 82%)
  adding: extdata/rformat_dist_0.03.txt.gz (332 bytes security) (deflated 45%)
  adding: extdata/rich_dense_otu_table.biom (332 bytes security) (deflated 79%)
  adding: extdata/rich_sparse_otu_table.biom (332 bytes security) (deflated 79%)
  adding: extdata/study_1457_split_library_seqs_and_mapping.zip (332 bytes security) (stored 0%)
  adding: extdata/study_816_split_library_seqs_and_mapping.tar.gz (332 bytes security) (stored 0%)
  adding: extdata/study_816_split_library_seqs_and_mapping.zip (332 bytes security) (stored 0%)
  adding: extdata/study_gp.txt (332 bytes security) (deflated 61%)
  adding: extdata/usearch.uc (332 bytes security) (deflated 78%)
  adding: help/ (372 bytes security) (stored 0%)
  adding: help/aliases.rds (332 bytes security) (stored 0%)
  adding: help/AnIndex (332 bytes security) (deflated 83%)
  adding: help/paths.rds (332 bytes security) (stored 0%)
  adding: help/phyloseq.rdb (332 bytes security) (deflated 1%)
  adding: help/phyloseq.rdx (332 bytes security) (stored 0%)
  adding: html/ (372 bytes security) (stored 0%)
  adding: html/00Index.html (332 bytes security) (deflated 84%)
  adding: html/access.html (332 bytes security) (deflated 59%)
  adding: html/assign-otu_table.html (332 bytes security) (deflated 58%)
  adding: html/assign-phy_tree.html (332 bytes security) (deflated 55%)
  adding: html/assign-sample_data.html (332 bytes security) (deflated 62%)
  adding: html/assign-sample_names.html (332 bytes security) (deflated 63%)
  adding: html/assign-taxa_are_rows.html (332 bytes security) (deflated 54%)
  adding: html/assign-taxa_names.html (332 bytes security) (deflated 64%)
  adding: html/assign-tax_table.html (332 bytes security) (deflated 63%)
  adding: html/build_tax_table.html (332 bytes security) (deflated 60%)
  adding: html/capscale-phyloseq-methods.html (332 bytes security) (deflated 63%)
  adding: html/cca-rda-phyloseq-methods.html (332 bytes security) (deflated 64%)
  adding: html/chunkReOrder.html (332 bytes security) (deflated 52%)
  adding: html/data-enterotype.html (332 bytes security) (deflated 52%)
  adding: html/data-esophagus.html (332 bytes security) (deflated 52%)
  adding: html/data-GlobalPatterns.html (332 bytes security) (deflated 54%)
  adding: html/data-soilrep.html (332 bytes security) (deflated 57%)
  adding: html/decorana.html (332 bytes security) (deflated 50%)
  adding: html/dist-class.html (332 bytes security) (deflated 49%)
  adding: html/distance.html (332 bytes security) (deflated 68%)
  adding: html/distanceMethodList.html (332 bytes security) (deflated 83%)
  adding: html/DPCoA.html (332 bytes security) (deflated 62%)
  adding: html/envHash2otu_table.html (332 bytes security) (deflated 57%)
  adding: html/estimate_richness.html (332 bytes security) (deflated 57%)
  adding: html/export_env_file.html (332 bytes security) (deflated 54%)
  adding: html/export_mothur_dist.html (332 bytes security) (deflated 54%)
  adding: html/extract-methods.html (332 bytes security) (deflated 62%)
  adding: html/filterfun_sample.html (332 bytes security) (deflated 53%)
  adding: html/filter_taxa.html (332 bytes security) (deflated 61%)
  adding: html/fix_phylo.html (332 bytes security) (deflated 44%)
  adding: html/gapstat_ord.html (332 bytes security) (deflated 60%)
  adding: html/genefilter_sample-methods.html (332 bytes security) (deflated 60%)
  adding: html/get.component.classes.html (332 bytes security) (deflated 48%)
  adding: html/getslots.phyloseq.html (332 bytes security) (deflated 55%)
  adding: html/get_sample-methods.html (332 bytes security) (deflated 56%)
  adding: html/get_taxa-methods.html (332 bytes security) (deflated 57%)
  adding: html/get_taxa_unique.html (332 bytes security) (deflated 58%)
  adding: html/get_variable.html (332 bytes security) (deflated 57%)
  adding: html/import.html (332 bytes security) (deflated 60%)
  adding: html/import_biom.html (332 bytes security) (deflated 65%)
  adding: html/import_env_file.html (332 bytes security) (deflated 58%)
  adding: html/import_mothur.html (332 bytes security) (deflated 64%)
  adding: html/import_mothur_constaxonomy.html (332 bytes security) (deflated 58%)
  adding: html/import_mothur_dist.html (332 bytes security) (deflated 51%)
  adding: html/import_mothur_groups.html (332 bytes security) (deflated 51%)
  adding: html/import_mothur_otulist.html (332 bytes security) (deflated 57%)
  adding: html/import_mothur_otu_table.html (332 bytes security) (deflated 57%)
  adding: html/import_mothur_shared.html (332 bytes security) (deflated 52%)
  adding: html/import_pyrotagger_tab.html (332 bytes security) (deflated 56%)
  adding: html/import_qiime.html (332 bytes security) (deflated 63%)
  adding: html/import_qiime_otu_tax.html (332 bytes security) (deflated 57%)
  adding: html/import_qiime_sample_data.html (332 bytes security) (deflated 57%)
  adding: html/import_RDP_cluster.html (332 bytes security) (deflated 57%)
  adding: html/import_RDP_otu.html (332 bytes security) (deflated 50%)
  adding: html/import_uparse.html (332 bytes security) (deflated 60%)
  adding: html/import_usearch_uc.html (332 bytes security) (deflated 60%)
  adding: html/index_reorder.html (332 bytes security) (deflated 51%)
  adding: html/intersect_taxa.html (332 bytes security) (deflated 53%)
  adding: html/JSD.html (332 bytes security) (deflated 56%)
  adding: html/make_network.html (332 bytes security) (deflated 62%)
  adding: html/merge_phyloseq.html (332 bytes security) (deflated 62%)
  adding: html/merge_phyloseq_pair-methods.html (332 bytes security) (deflated 63%)
  adding: html/merge_samples-methods.html (332 bytes security) (deflated 60%)
  adding: html/merge_taxa-methods.html (332 bytes security) (deflated 64%)
  adding: html/metaMDS.html (332 bytes security) (deflated 49%)
  adding: html/microbio_me_qiime.html (332 bytes security) (deflated 62%)
  adding: html/mt-methods.html (332 bytes security) (deflated 65%)
  adding: html/nodeplotblank.html (332 bytes security) (deflated 58%)
  adding: html/nodeplotboot.html (332 bytes security) (deflated 59%)
  adding: html/nodeplotdefault.html (332 bytes security) (deflated 56%)
  adding: html/nsamples-methods.html (332 bytes security) (deflated 59%)
  adding: html/ntaxa-methods.html (332 bytes security) (deflated 59%)
  adding: html/ordinate.html (332 bytes security) (deflated 66%)
  adding: html/otu_table-class.html (332 bytes security) (deflated 50%)
  adding: html/otu_table-methods.html (332 bytes security) (deflated 62%)
  adding: html/parseTaxonomy-functions.html (332 bytes security) (deflated 58%)
  adding: html/pcoa.html (332 bytes security) (deflated 42%)
  adding: html/phylo-class.html (332 bytes security) (deflated 49%)
  adding: html/phylo.html (332 bytes security) (deflated 51%)
  adding: html/phyloseq-class.html (332 bytes security) (deflated 61%)
  adding: html/phyloseq-deprecated.html (332 bytes security) (deflated 85%)
  adding: html/phyloseq-package.html (332 bytes security) (deflated 50%)
  adding: html/phyloseq.html (332 bytes security) (deflated 60%)
  adding: html/phyloseq_to_deseq2.html (332 bytes security) (deflated 61%)
  adding: html/phyloseq_to_metagenomeSeq.html (332 bytes security) (deflated 62%)
  adding: html/phy_tree-methods.html (332 bytes security) (deflated 60%)
  adding: html/plot_bar.html (332 bytes security) (deflated 64%)
  adding: html/plot_clusgap.html (332 bytes security) (deflated 56%)
  adding: html/plot_heatmap.html (332 bytes security) (deflated 67%)
  adding: html/plot_net.html (332 bytes security) (deflated 66%)
  adding: html/plot_network.html (332 bytes security) (deflated 67%)
  adding: html/plot_ordination.html (332 bytes security) (deflated 64%)
  adding: html/plot_phyloseq-methods.html (332 bytes security) (deflated 57%)
  adding: html/plot_richness.html (332 bytes security) (deflated 68%)
  adding: html/plot_scree.html (332 bytes security) (deflated 57%)
  adding: html/plot_tree.html (332 bytes security) (deflated 67%)
  adding: html/prune_samples-methods.html (332 bytes security) (deflated 56%)
  adding: html/prune_taxa-methods.html (332 bytes security) (deflated 60%)
  adding: html/psmelt.html (332 bytes security) (deflated 56%)
  adding: html/R.css (332 bytes security) (deflated 75%)
  adding: html/rank_names.html (332 bytes security) (deflated 56%)
  adding: html/rarefy_even_depth.html (332 bytes security) (deflated 60%)
  adding: html/read_tree.html (332 bytes security) (deflated 58%)
  adding: html/read_tree_greengenes.html (332 bytes security) (deflated 55%)
  adding: html/reconcile_categories.html (332 bytes security) (deflated 54%)
  adding: html/refseq-methods.html (332 bytes security) (deflated 59%)
  adding: html/rm_outlierf.html (332 bytes security) (deflated 52%)
  adding: html/sample_data-class.html (332 bytes security) (deflated 48%)
  adding: html/sample_data-methods.html (332 bytes security) (deflated 61%)
  adding: html/sample_names-methods.html (332 bytes security) (deflated 58%)
  adding: html/sample_sums.html (332 bytes security) (deflated 55%)
  adding: html/sample_variables.html (332 bytes security) (deflated 56%)
  adding: html/show-methods.html (332 bytes security) (deflated 54%)
  adding: html/show_mothur_cutoffs.html (332 bytes security) (deflated 52%)
  adding: html/splat.phyloseq.objects.html (332 bytes security) (deflated 53%)
  adding: html/subset_ord_plot.html (332 bytes security) (deflated 61%)
  adding: html/subset_samples-methods.html (332 bytes security) (deflated 56%)
  adding: html/subset_taxa-methods.html (332 bytes security) (deflated 55%)
  adding: html/taxa_are_rows-methods.html (332 bytes security) (deflated 56%)
  adding: html/taxa_names-methods.html (332 bytes security) (deflated 61%)
  adding: html/taxa_sums.html (332 bytes security) (deflated 54%)
  adding: html/taxonomyTable-class.html (332 bytes security) (deflated 45%)
  adding: html/tax_glom.html (332 bytes security) (deflated 57%)
  adding: html/tax_table-methods.html (332 bytes security) (deflated 59%)
  adding: html/threshrank.html (332 bytes security) (deflated 57%)
  adding: html/threshrankfun.html (332 bytes security) (deflated 59%)
  adding: html/tip_glom.html (332 bytes security) (deflated 62%)
  adding: html/topf.html (332 bytes security) (deflated 53%)
  adding: html/topk.html (332 bytes security) (deflated 52%)
  adding: html/topp.html (332 bytes security) (deflated 55%)
  adding: html/transformcounts.html (332 bytes security) (deflated 60%)
  adding: html/transpose-methods.html (332 bytes security) (deflated 55%)
  adding: html/tree_layout.html (332 bytes security) (deflated 61%)
  adding: html/UniFrac-methods.html (332 bytes security) (deflated 64%)
  adding: INDEX (332 bytes security) (deflated 69%)
  adding: MD5 (332 bytes security) (deflated 52%)
  adding: Meta/ (372 bytes security) (stored 0%)
  adding: Meta/data.rds (332 bytes security) (stored 0%)
  adding: Meta/features.rds (332 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (332 bytes security) (deflated 1%)
  adding: Meta/links.rds (332 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (332 bytes security) (stored 0%)
  adding: Meta/package.rds (332 bytes security) (stored 0%)
  adding: Meta/Rd.rds (332 bytes security) (stored 0%)
  adding: Meta/vignette.rds (332 bytes security) (stored 0%)
  adding: NAMESPACE (332 bytes security) (deflated 76%)
  adding: NEWS (332 bytes security) (deflated 70%)
  adding: R/ (372 bytes security) (stored 0%)
  adding: R/phyloseq (332 bytes security) (deflated 41%)
  adding: R/phyloseq.rdb (332 bytes security) (deflated 28%)
  adding: R/phyloseq.rdx (332 bytes security) (stored 0%)
  adding: scripts/ (372 bytes security) (stored 0%)
  adding: scripts/installer.R (332 bytes security) (deflated 62%)