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CHECK report for nudge on tokay1

This page was generated on 2018-04-12 13:18:15 -0400 (Thu, 12 Apr 2018).

Package 954/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nudge 1.44.0
N. Dean
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/nudge
Branch: RELEASE_3_6
Last Commit: ce47195
Last Changed Date: 2017-10-30 12:39:17 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: nudge
Version: 1.44.0
Command: rm -rf nudge.buildbin-libdir nudge.Rcheck && mkdir nudge.buildbin-libdir nudge.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=nudge.buildbin-libdir nudge_1.44.0.tar.gz >nudge.Rcheck\00install.out 2>&1 && cp nudge.Rcheck\00install.out nudge-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=nudge.buildbin-libdir --install="check:nudge-install.out" --force-multiarch --no-vignettes --timings nudge_1.44.0.tar.gz
StartedAt: 2018-04-12 01:51:39 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 01:52:31 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 51.9 seconds
RetCode: 0
Status:  OK  
CheckDir: nudge.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf nudge.buildbin-libdir nudge.Rcheck && mkdir nudge.buildbin-libdir nudge.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=nudge.buildbin-libdir nudge_1.44.0.tar.gz >nudge.Rcheck\00install.out 2>&1 && cp nudge.Rcheck\00install.out nudge-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=nudge.buildbin-libdir --install="check:nudge-install.out" --force-multiarch --no-vignettes --timings nudge_1.44.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/nudge.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'nudge/DESCRIPTION' ... OK
* this is package 'nudge' version '1.44.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'nudge' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/nudge.Rcheck/00check.log'
for details.



Installation output

nudge.Rcheck/00install.out


install for i386

* installing *source* package 'nudge' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'nudge'
    finding HTML links ... done
    hiv                                     html  
    like                                    html  
    neg.contr                               html  
    norm1a                                  html  
    norm1b                                  html  
    norm1c                                  html  
    norm1d                                  html  
    norm2c                                  html  
    norm2d                                  html  
    nudge1                                  html  
    nudge2                                  html  
    pos.contr                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'nudge' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'nudge' as nudge_1.44.0.zip
* DONE (nudge)
In R CMD INSTALL
In R CMD INSTALL

Tests output


Example timings

nudge.Rcheck/examples_i386/nudge-Ex.timings

nameusersystemelapsed
norm1a0.560.020.58
norm1b0.690.000.69
norm1c0.360.000.36
norm1d0.250.000.25
norm2c3.390.034.11
norm2d3.820.004.08
nudge10.940.010.95
nudge23.420.003.67

nudge.Rcheck/examples_x64/nudge-Ex.timings

nameusersystemelapsed
norm1a0.500.030.54
norm1b0.600.020.60
norm1c0.260.010.29
norm1d0.160.000.15
norm2c2.620.083.35
norm2d2.820.023.12
nudge10.920.000.92
nudge22.830.033.17