Package: mvGST

Version: 1.12.2

Command: rm -rf mvGST.buildbin-libdir mvGST.Rcheck && mkdir mvGST.buildbin-libdir mvGST.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mvGST.buildbin-libdir mvGST_1.12.2.tar.gz >mvGST.Rcheck\00install.out 2>&1 && cp mvGST.Rcheck\00install.out mvGST-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=mvGST.buildbin-libdir --install="check:mvGST-install.out" --force-multiarch --no-vignettes --timings mvGST_1.12.2.tar.gz

StartedAt: 2018-04-12 01:43:41 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 01:48:09 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 267.4 seconds

RetCode: 0

Status:  OK

CheckDir: mvGST.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf mvGST.buildbin-libdir mvGST.Rcheck && mkdir mvGST.buildbin-libdir mvGST.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mvGST.buildbin-libdir mvGST_1.12.2.tar.gz >mvGST.Rcheck\00install.out 2>&1 && cp mvGST.Rcheck\00install.out mvGST-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=mvGST.buildbin-libdir --install="check:mvGST-install.out" --force-multiarch --no-vignettes --timings mvGST_1.12.2.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/mvGST.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mvGST/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mvGST' version '1.12.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mvGST' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
combinePvalues: no visible global function definition for 'pnorm'
combinePvalues: no visible global function definition for 'qnorm'
distributeWeight: no visible global function definition for
  'flush.console'
hartung: no visible global function definition for 'qnorm'
hartung: no visible global function definition for 'pnorm'
interactiveGraph: no visible global function definition for 'locator'
oneSideBYAdjust: no visible binding for global variable 'p.adjust'
p.adjust.SFL: no visible global function definition for 'flush.console'
Undefined global functions or variables:
  flush.console locator p.adjust pnorm qnorm
Consider adding
  importFrom("graphics", "locator")
  importFrom("stats", "p.adjust", "pnorm", "qnorm")
  importFrom("utils", "flush.console")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
              user system elapsed
profileTable 25.43   0.09   25.56
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
              user system elapsed
profileTable 31.03   0.08   31.14
graphCell     6.91   0.13    7.03
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/mvGST.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'mvGST' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'mvGST'
    finding HTML links ... done
    go2Profile                              html  
    graphCell                               html  
    mvGST-package                           html  
    mvGST.other                             html  
    mvGSTsamples                            html  
    p.adjust.SFL                            html  
    pickOut                                 html  
    profileTable                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'mvGST' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mvGST' as mvGST_1.12.2.zip
* DONE (mvGST)
In R CMD INSTALL
In R CMD INSTALL