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This page was generated on 2018-04-12 13:22:42 -0400 (Thu, 12 Apr 2018).
Package 824/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
metagenomeSeq 1.20.1 Joseph N. Paulson
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: metagenomeSeq |
Version: 1.20.1 |
Command: cd metagenomeSeq.buildbin-libdir/metagenomeSeq && zip -r ../../metagenomeSeq_1.20.1.zip . & cd ../.. |
StartedAt: 2018-04-12 04:50:26 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 04:51:08 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 41.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: metagenomeSeq_1.20.1.zip |
PackageFileSize: 3.988 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd metagenomeSeq.buildbin-libdir/metagenomeSeq && zip -r ../../metagenomeSeq_1.20.1.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 70%) adding: data/ (372 bytes security) (stored 0%) adding: data/lungData.rda (332 bytes security) (deflated 16%) adding: data/mouseData.rda (332 bytes security) (deflated 0%) adding: DESCRIPTION (332 bytes security) (deflated 42%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/fitTimeSeries.pdf (332 bytes security) (deflated 10%) adding: doc/fitTimeSeries.R (332 bytes security) (deflated 65%) adding: doc/fitTimeSeries.Rnw (332 bytes security) (deflated 60%) adding: doc/index.html (332 bytes security) (deflated 67%) adding: doc/metagenomeSeq.pdf (332 bytes security) (deflated 14%) adding: doc/metagenomeSeq.R (332 bytes security) (deflated 67%) adding: doc/metagenomeSeq.Rnw (332 bytes security) (deflated 66%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/CHK_clinical.csv (332 bytes security) (deflated 87%) adding: extdata/CHK_NAME.otus.count.csv (332 bytes security) (deflated 96%) adding: extdata/CHK_otus.taxonomy.csv (332 bytes security) (deflated 87%) adding: extdata/lungfit.rds (332 bytes security) (deflated 0%) adding: extdata/tmp.tsv (332 bytes security) (deflated 39%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 72%) adding: help/metagenomeSeq.rdb (332 bytes security) (deflated 2%) adding: help/metagenomeSeq.rdx (332 bytes security) (deflated 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 82%) adding: html/aggregateBySample.html (332 bytes security) (deflated 57%) adding: html/aggregateByTaxonomy.html (332 bytes security) (deflated 63%) adding: html/biom2MRexperiment.html (332 bytes security) (deflated 54%) adding: html/calcNormFactors.html (332 bytes security) (deflated 54%) adding: html/calcPosComponent.html (332 bytes security) (deflated 52%) adding: html/calcShrinkParameters.html (332 bytes security) (deflated 54%) adding: html/calcStandardError.html (332 bytes security) (deflated 56%) adding: html/calculateEffectiveSamples.html (332 bytes security) (deflated 53%) adding: html/calcZeroAdjustment.html (332 bytes security) (deflated 56%) adding: html/calcZeroComponent.html (332 bytes security) (deflated 52%) adding: html/correctIndices.html (332 bytes security) (deflated 52%) adding: html/correlationTest.html (332 bytes security) (deflated 59%) adding: html/cumNorm.html (332 bytes security) (deflated 51%) adding: html/cumNormMat.html (332 bytes security) (deflated 52%) adding: html/cumNormStat.html (332 bytes security) (deflated 56%) adding: html/cumNormStatFast.html (332 bytes security) (deflated 55%) adding: html/doCountMStep.html (332 bytes security) (deflated 55%) adding: html/doEStep.html (332 bytes security) (deflated 52%) adding: html/doZeroMStep.html (332 bytes security) (deflated 50%) adding: html/exportMat.html (332 bytes security) (deflated 56%) adding: html/exportStats.html (332 bytes security) (deflated 52%) adding: html/expSummary.html (332 bytes security) (deflated 48%) adding: html/extractMR.html (332 bytes security) (deflated 52%) adding: html/filterData.html (332 bytes security) (deflated 53%) adding: html/fitDO.html (332 bytes security) (deflated 59%) adding: html/fitFeatureModel.html (332 bytes security) (deflated 58%) adding: html/fitLogNormal.html (332 bytes security) (deflated 54%) adding: html/fitMultipleTimeSeries.html (332 bytes security) (deflated 58%) adding: html/fitPA.html (332 bytes security) (deflated 56%) adding: html/fitSSTimeSeries.html (332 bytes security) (deflated 64%) adding: html/fitTimeSeries.html (332 bytes security) (deflated 65%) adding: html/fitZeroLogNormal.html (332 bytes security) (deflated 62%) adding: html/fitZig.html (332 bytes security) (deflated 57%) adding: html/getCountDensity.html (332 bytes security) (deflated 49%) adding: html/getEpsilon.html (332 bytes security) (deflated 50%) adding: html/getNegativeLogLikelihoods.html (332 bytes security) (deflated 52%) adding: html/getPi.html (332 bytes security) (deflated 49%) adding: html/getZ.html (332 bytes security) (deflated 59%) adding: html/isItStillActive.html (332 bytes security) (deflated 56%) adding: html/libSize-set.html (332 bytes security) (deflated 51%) adding: html/libSize.html (332 bytes security) (deflated 48%) adding: html/loadBiom.html (332 bytes security) (deflated 53%) adding: html/loadMeta.html (332 bytes security) (deflated 49%) adding: html/loadMetaQ.html (332 bytes security) (deflated 50%) adding: html/loadPhenoData.html (332 bytes security) (deflated 52%) adding: html/lungData.html (332 bytes security) (deflated 46%) adding: html/makeLabels.html (332 bytes security) (deflated 54%) adding: html/mergeMRexperiments.html (332 bytes security) (deflated 54%) adding: html/mergeTable.html (332 bytes security) (deflated 49%) adding: html/metagenomeSeq-deprecated.html (332 bytes security) (deflated 54%) adding: html/metagenomeSeq-package.html (332 bytes security) (deflated 47%) adding: html/mouseData.html (332 bytes security) (deflated 46%) adding: html/MRcoefs.html (332 bytes security) (deflated 63%) adding: html/MRcounts.html (332 bytes security) (deflated 53%) adding: html/MRexperiment-class.html (332 bytes security) (deflated 60%) adding: html/MRexperiment2biom.html (332 bytes security) (deflated 59%) adding: html/MRfulltable.html (332 bytes security) (deflated 62%) adding: html/MRtable.html (332 bytes security) (deflated 62%) adding: html/newMRexperiment.html (332 bytes security) (deflated 57%) adding: html/normFactors-set.html (332 bytes security) (deflated 53%) adding: html/normFactors.html (332 bytes security) (deflated 51%) adding: html/plotBubble.html (332 bytes security) (deflated 60%) adding: html/plotClassTimeSeries.html (332 bytes security) (deflated 58%) adding: html/plotCorr.html (332 bytes security) (deflated 56%) adding: html/plotFeature.html (332 bytes security) (deflated 60%) adding: html/plotGenus.html (332 bytes security) (deflated 62%) adding: html/plotMRheatmap.html (332 bytes security) (deflated 59%) adding: html/plotOrd.html (332 bytes security) (deflated 61%) adding: html/plotOTU.html (332 bytes security) (deflated 61%) adding: html/plotRare.html (332 bytes security) (deflated 52%) adding: html/plotTimeSeries.html (332 bytes security) (deflated 58%) adding: html/posteriorProbs.html (332 bytes security) (deflated 50%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/returnAppropriateObj.html (332 bytes security) (deflated 56%) adding: html/ssFit.html (332 bytes security) (deflated 60%) adding: html/ssIntervalCandidate.html (332 bytes security) (deflated 59%) adding: html/ssPerm.html (332 bytes security) (deflated 55%) adding: html/ssPermAnalysis.html (332 bytes security) (deflated 60%) adding: html/trapz.html (332 bytes security) (deflated 48%) adding: html/ts2MRexperiment.html (332 bytes security) (deflated 64%) adding: html/uniqueFeatures.html (332 bytes security) (deflated 55%) adding: html/zigControl.html (332 bytes security) (deflated 57%) adding: INDEX (332 bytes security) (deflated 72%) adding: MD5 (332 bytes security) (deflated 49%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (deflated 1%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 58%) adding: NEWS (332 bytes security) (deflated 54%) adding: R/ (372 bytes security) (stored 0%) adding: R/metagenomeSeq (332 bytes security) (deflated 41%) adding: R/metagenomeSeq.rdb (332 bytes security) (deflated 16%) adding: R/metagenomeSeq.rdx (332 bytes security) (stored 0%)