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CHECK report for hypergraph on tokay1

This page was generated on 2018-04-12 13:17:53 -0400 (Thu, 12 Apr 2018).

Package 668/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
hypergraph 1.50.0
Bioconductor Package Maintainer
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/hypergraph
Branch: RELEASE_3_6
Last Commit: fb3d523
Last Changed Date: 2017-10-30 12:39:05 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: hypergraph
Version: 1.50.0
Command: rm -rf hypergraph.buildbin-libdir hypergraph.Rcheck && mkdir hypergraph.buildbin-libdir hypergraph.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hypergraph.buildbin-libdir hypergraph_1.50.0.tar.gz >hypergraph.Rcheck\00install.out 2>&1 && cp hypergraph.Rcheck\00install.out hypergraph-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=hypergraph.buildbin-libdir --install="check:hypergraph-install.out" --force-multiarch --no-vignettes --timings hypergraph_1.50.0.tar.gz
StartedAt: 2018-04-12 00:46:17 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 00:47:01 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 44.4 seconds
RetCode: 0
Status:  OK  
CheckDir: hypergraph.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf hypergraph.buildbin-libdir hypergraph.Rcheck && mkdir hypergraph.buildbin-libdir hypergraph.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hypergraph.buildbin-libdir hypergraph_1.50.0.tar.gz >hypergraph.Rcheck\00install.out 2>&1 && cp hypergraph.Rcheck\00install.out hypergraph-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=hypergraph.buildbin-libdir --install="check:hypergraph-install.out" --force-multiarch --no-vignettes --timings hypergraph_1.50.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/hypergraph.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hypergraph/DESCRIPTION' ... OK
* this is package 'hypergraph' version '1.50.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hypergraph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'hypergraph_unit_tests.R'
 OK
** running tests for arch 'x64' ...
  Running 'hypergraph_unit_tests.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

hypergraph.Rcheck/00install.out


install for i386

* installing *source* package 'hypergraph' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'hypergraph'
    finding HTML links ... done
    DirectedHyperedge-class                 html  
    DirectedHyperedge                       html  
    Hyperedge-class                         html  
    Hyperedge                               html  
    Hypergraph-class                        html  
    Hypergraph                              html  
    kCores                                  html  
    l2hel                                   html  
    vCover                                  html  
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'hypergraph' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hypergraph' as hypergraph_1.50.0.zip
* DONE (hypergraph)
In R CMD INSTALL
In R CMD INSTALL

Tests output

hypergraph.Rcheck/tests_i386/hypergraph_unit_tests.Rout


R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("hypergraph")

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min



RUNIT TEST PROTOCOL -- Thu Apr 12 00:46:55 2018 
*********************************************** 
Number of test functions: 12 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
hypergraph RUnit Tests - 12 test functions, 0 errors, 0 failures
Number of test functions: 12 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   1.68    0.01    1.68

hypergraph.Rcheck/tests_x64/hypergraph_unit_tests.Rout


R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("hypergraph")

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min



RUNIT TEST PROTOCOL -- Thu Apr 12 00:46:58 2018 
*********************************************** 
Number of test functions: 12 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
hypergraph RUnit Tests - 12 test functions, 0 errors, 0 failures
Number of test functions: 12 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   1.78    0.04    1.81

Example timings

hypergraph.Rcheck/examples_i386/hypergraph-Ex.timings

nameusersystemelapsed
DirectedHyperedge-class0.010.000.02
Hyperedge-class000
Hypergraph-class000
kCores0.020.000.01
l2hel000
vCover0.020.000.02

hypergraph.Rcheck/examples_x64/hypergraph-Ex.timings

nameusersystemelapsed
DirectedHyperedge-class000
Hyperedge-class000
Hypergraph-class000
kCores0.010.000.02
l2hel000
vCover0.040.000.03