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INSTALL report for geNetClassifier on tokay1

This page was generated on 2018-04-12 13:22:43 -0400 (Thu, 12 Apr 2018).

Package 550/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geNetClassifier 1.18.0
Sara Aibar
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/geNetClassifier
Branch: RELEASE_3_6
Last Commit: 8749315
Last Changed Date: 2017-10-30 12:40:02 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: geNetClassifier
Version: 1.18.0
Command: rm -rf geNetClassifier.buildbin-libdir && mkdir geNetClassifier.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/geNetClassifier_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=geNetClassifier.buildbin-libdir --merge-multiarch geNetClassifier_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL geNetClassifier_1.18.0.zip && rm geNetClassifier_1.18.0.tar.gz geNetClassifier_1.18.0.zip
StartedAt: 2018-04-11 18:23:36 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:24:51 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 75.1 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   rm -rf geNetClassifier.buildbin-libdir && mkdir geNetClassifier.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/geNetClassifier_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=geNetClassifier.buildbin-libdir --merge-multiarch geNetClassifier_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL geNetClassifier_1.18.0.zip  && rm geNetClassifier_1.18.0.tar.gz geNetClassifier_1.18.0.zip
###
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install for i386

* installing *source* package 'geNetClassifier' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'geNetClassifier'
    finding HTML links ... done
    GeNetClassifierReturn-class             html  
    GeneralizationError-class               html  
    GenesNetwork-class                      html  
    GenesRanking-class                      html  
    calculateGenesRanking                   html  
    externalValidation.probMatrix           html  
    externalValidation.stats                html  
    gClasses-methods                        html  
    geNetClassifier-package                 html  
    geNetClassifier                         html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgRahTu/R.INSTALL38834ae31a5/geNetClassifier/man/geNetClassifier.Rd:147: missing file link 'brewer.pal'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgRahTu/R.INSTALL38834ae31a5/geNetClassifier/man/geNetClassifier.Rd:151: missing file link 'igraph'
    geneSymbols                             html  
    genesDetails-methods                    html  
    getEdges-methods                        html  
    getNodes-methods                        html  
    getNumEdges-methods                     html  
    getNumNodes-methods                     html  
    getRanking-methods                      html  
    getSubNetwork-methods                   html  
    getTopRanking-methods                   html  
    leukemiasClassifier                     html  
    network2txt                             html  
    numGenes-methods                        html  
    numSignificantGenes-methods             html  
    overview-methods                        html  
    plot.GeNetClassifierReturn              html  
    plot.GenesRanking                       html  
    plotAssignments                         html  
    plotDiscriminantPower                   html  
    plotExpressionProfiles                  html  
    plotNetwork                             html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgRahTu/R.INSTALL38834ae31a5/geNetClassifier/man/plotNetwork.Rd:74: missing file link 'igraph'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgRahTu/R.INSTALL38834ae31a5/geNetClassifier/man/plotNetwork.Rd:84: missing file link 'igraph'
    queryGeNetClassifier                    html  
    querySummary                            html  
    setProperties-methods                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'geNetClassifier' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'geNetClassifier' as geNetClassifier_1.18.0.zip
* DONE (geNetClassifier)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'geNetClassifier' successfully unpacked and MD5 sums checked
In R CMD INSTALL