Package: gaga

Version: 2.24.0

Command: rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/gaga_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=gaga.buildbin-libdir --merge-multiarch gaga_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL gaga_2.24.0.zip && rm gaga_2.24.0.tar.gz gaga_2.24.0.zip

StartedAt: 2018-04-11 18:23:37 -0400 (Wed, 11 Apr 2018)

EndedAt: 2018-04-11 18:24:46 -0400 (Wed, 11 Apr 2018)

EllapsedTime: 68.5 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/gaga_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=gaga.buildbin-libdir --merge-multiarch gaga_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL gaga_2.24.0.zip  && rm gaga_2.24.0.tar.gz gaga_2.24.0.zip
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install for i386

* installing *source* package 'gaga' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c cseqdesma.c -o cseqdesma.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c cstat.c -o cstat.o
cstat.c: In function 'qnormC':
cstat.c:1638:3: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized]
   return y; 
   ^
cstat.c: In function 'pnormC':
cstat.c:1552:5: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
     p, q, mean,sd,bound,x,z; 
     ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/gaga.buildbin-libdir/gaga/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'gaga'
    finding HTML links ... done
    buildPatterns                           html  
    checkfit                                html  
    classpred                               html  
    dcgamma                                 html  
    findgenes                               html  
    fitGG                                   html  
    forwsimDiffExpr                         html  
    geneclus                                html  
    getpar                                  html  
    parest                                  html  
    plotForwSim                             html  
    posmeansGG                              html  
    powclasspred                            html  
    powfindgenes                            html  
    print.gagaclus                          html  
    print.gagafit                           html  
    print.gagahyp                           html  
    seqBoundariesGrid                       html  
    simGG                                   html  
    simnewsamples                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'gaga' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c cseqdesma.c -o cseqdesma.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c cstat.c -o cstat.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/gaga.buildbin-libdir/gaga/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gaga' as gaga_2.24.0.zip
* DONE (gaga)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'gaga' successfully unpacked and MD5 sums checked
In R CMD INSTALL