Multiple platform build/check report for BioC 3.6 - CHECK report for flowPlots on tokay1

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### Running command:
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###   rm -rf flowPlots.buildbin-libdir flowPlots.Rcheck && mkdir flowPlots.buildbin-libdir flowPlots.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowPlots.buildbin-libdir flowPlots_1.26.0.tar.gz >flowPlots.Rcheck\00install.out 2>&1 && cp flowPlots.Rcheck\00install.out flowPlots-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=flowPlots.buildbin-libdir --install="check:flowPlots-install.out" --force-multiarch --no-vignettes --timings flowPlots_1.26.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/flowPlots.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowPlots/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowPlots' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowPlots' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GroupListBoxplot: no visible global function definition for 'boxplot'
GroupListBoxplot: no visible global function definition for 'points'
GroupListBoxplot: no visible global function definition for 'axis'
GroupListBoxplot: no visible global function definition for 'mtext'
GroupListBoxplot: no visible global function definition for 'box'
GroupListBoxplot: no visible global function definition for 'legend'
GroupListBoxplot: no visible global function definition for 'title'
GroupListBoxplot: no visible global function definition for 'text'
computePFDGroupStatsList: no visible global function definition for
  'sd'
get2GroupPValues: no visible global function definition for
  'wilcox.test'
getMultiGroupPValues: no visible global function definition for
  'kruskal.test'
readStackedData,character: no visible global function definition for
  'read.csv'
Undefined global functions or variables:
  axis box boxplot kruskal.test legend mtext points read.csv sd text
  title wilcox.test
Consider adding
  importFrom("graphics", "axis", "box", "boxplot", "legend", "mtext",
             "points", "text", "title")
  importFrom("stats", "kruskal.test", "sd", "wilcox.test")
  importFrom("utils", "read.csv")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
StackedData-class 5.58   0.05    5.62
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/flowPlots.Rcheck/00check.log'
for details.


install for i386

* installing *source* package 'flowPlots' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'flowPlots'
    finding HTML links ... done
    GroupListBoxplot                        html  
    StackedData-class                       html  
    adultsNeonates                          html  
    computeMarginalData-methods             html  
    computeMarkers-methods                  html  
    computePFDData-methods                  html  
    computePFDGroupStatsList                html  
    computePFDPartsData-methods             html  
    computeProfileData-methods              html  
    legendPFDStatsGroupNames                html  
    makeBarplotData                         html  
    makeDataList                            html  
    makeTernaryData                         html  
    marginalDF                              html  
    marginalData-methods                    html  
    markerMatrix                            html  
    markers-methods                         html  
    pfdDF                                   html  
    pfdData-methods                         html  
    pfdPartsData-methods                    html  
    pfdPartsList                            html  
    profileDF                               html  
    profileData-methods                     html  
    readStackedData-methods                 html  
    stackedData-methods                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'flowPlots' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowPlots' as flowPlots_1.26.0.zip
* DONE (flowPlots)
In R CMD INSTALL
In R CMD INSTALL

CHECK report for flowPlots on tokay1

Summary

Command output

Installation output

Tests output

Example timings