Shaojun Tang
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/fCI |
| Branch: RELEASE_3_6 |
| Last Commit: 6eefcfd |
| Last Changed Date: 2017-10-30 12:40:52 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:26:30 -0400 (Thu, 12 Apr 2018).
| Package 458/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| fCI 1.8.0 Shaojun Tang
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | WARNINGS | OK | |
| Package: fCI |
| Version: 1.8.0 |
| Command: rm -rf fCI.buildbin-libdir fCI.Rcheck && mkdir fCI.buildbin-libdir fCI.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=fCI.buildbin-libdir fCI_1.8.0.tar.gz >fCI.Rcheck\00install.out 2>&1 && cp fCI.Rcheck\00install.out fCI-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=fCI.buildbin-libdir --install="check:fCI-install.out" --force-multiarch --no-vignettes --timings fCI_1.8.0.tar.gz |
| StartedAt: 2018-04-11 23:56:12 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 23:57:15 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 63.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: fCI.Rcheck |
| Warnings: 0 |
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### Running command:
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### rm -rf fCI.buildbin-libdir fCI.Rcheck && mkdir fCI.buildbin-libdir fCI.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=fCI.buildbin-libdir fCI_1.8.0.tar.gz >fCI.Rcheck\00install.out 2>&1 && cp fCI.Rcheck\00install.out fCI-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=fCI.buildbin-libdir --install="check:fCI-install.out" --force-multiarch --no-vignettes --timings fCI_1.8.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/fCI.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fCI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fCI' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
'FNN' 'psych' 'gtools' 'zoo' 'rgl' 'grid' 'VennDiagram'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fCI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
package 'methods' is used but not declared
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
fCI.call.by.index: no visible global function definition for 'new'
fCI.call.by.index: no visible global function definition for
'initialize'
find.fci.targets,NPCI: no visible global function definition for
'initialize'
populate,NPCI: no visible global function definition for '.hasSlot'
populate,NPCI: no visible global function definition for 'slot'
Undefined global functions or variables:
.hasSlot initialize new slot
Consider adding
importFrom("methods", ".hasSlot", "initialize", "new", "slot")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/fCI.Rcheck/00check.log'
for details.
fCI.Rcheck/00install.out
install for i386
* installing *source* package 'fCI' ...
** R
** data
** inst
** preparing package for lazy loading
in method for 'initialize' with signature '"NPCI"': no definition for class "NPCI"
in method for 'normalization' with signature '"NPCI"': no definition for class "NPCI"
in method for 'setfCI' with signature '"NPCI"': no definition for class "NPCI"
in method for 'populate' with signature '"NPCI"': no definition for class "NPCI"
in method for 'find.fci.targets' with signature '"NPCI"': no definition for class "NPCI"
in method for 'show.targets' with signature '"NPCI"': no definition for class "NPCI"
in method for 'call.npci' with signature '"NPCI"': no definition for class "NPCI"
in method for 'compute' with signature '"NPCI"': no definition for class "NPCI"
** help
*** installing help indices
converting help for package 'fCI'
finding HTML links ... done
NPCI-class html
call.npci-methods html
call.npci html
compute-methods html
compute html
deg.pairwise.fold.change html
deg.up.down.info html
deseq.median.ratio.normalization html
divergence.multivariate.distributions html
fCI-class html
fCI.call.by.index html
fci.data html
figures-methods html
figures html
find.fci.targets-methods html
find.fci.targets html
find.mid.point html
get.fold.large.step html
get.npci.data html
get.npci.distance.matrix html
get.outline.index html
get.protein.fold.step html
get.rank.combinations html
get.rna.fold.step html
initialize-methods html
intersect.of.lists html
is.installed html
multi.dimensional.fci.data html
normalization-methods html
normalization html
npci.gene.by.pvalues html
npci.index.reconsidered html
npci.index.to.be.removed html
npci.venn.diagram html
pairwise.change.occupancy html
populate-methods html
populate html
report.target.summary html
setfCI-methods html
setfCI html
show.targets-methods html
show.targets html
summarize-methods html
summarize html
total.library.size.normalization html
trim.size.normalization html
two.sample.log.ratio html
two.sample.permutation.test html
venndiagram-methods html
venndiagram html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'fCI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fCI' as fCI_1.8.0.zip
* DONE (fCI)
In R CMD INSTALL
In R CMD INSTALL
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fCI.Rcheck/examples_i386/fCI-Ex.timings
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fCI.Rcheck/examples_x64/fCI-Ex.timings
|