Package: erccdashboard

Version: 1.12.1

Command: rm -rf erccdashboard.buildbin-libdir erccdashboard.Rcheck && mkdir erccdashboard.buildbin-libdir erccdashboard.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=erccdashboard.buildbin-libdir erccdashboard_1.12.1.tar.gz >erccdashboard.Rcheck\00install.out 2>&1 && cp erccdashboard.Rcheck\00install.out erccdashboard-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=erccdashboard.buildbin-libdir --install="check:erccdashboard-install.out" --force-multiarch --no-vignettes --timings erccdashboard_1.12.1.tar.gz

StartedAt: 2018-04-11 23:49:39 -0400 (Wed, 11 Apr 2018)

EndedAt: 2018-04-11 23:51:12 -0400 (Wed, 11 Apr 2018)

EllapsedTime: 92.9 seconds

RetCode: 0

Status:  OK

CheckDir: erccdashboard.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf erccdashboard.buildbin-libdir erccdashboard.Rcheck && mkdir erccdashboard.buildbin-libdir erccdashboard.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=erccdashboard.buildbin-libdir erccdashboard_1.12.1.tar.gz >erccdashboard.Rcheck\00install.out 2>&1 && cp erccdashboard.Rcheck\00install.out erccdashboard-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=erccdashboard.buildbin-libdir --install="check:erccdashboard-install.out" --force-multiarch --no-vignettes --timings erccdashboard_1.12.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/erccdashboard.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'erccdashboard/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'erccdashboard' version '1.12.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'erccdashboard' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dynRangePlot: no visible binding for global variable 'value'
dynRangePlot: no visible binding for global variable 'Rep'
saveERCCPlots: no visible global function definition for 'par'
testDECount: no visible binding for global variable 'Atrend'
testDECount: no visible binding for global variable 'Dispersion'
testDECount: no visible binding for global variable 'Ratio'
Undefined global functions or variables:
  Atrend Dispersion Ratio Rep par value
Consider adding
  importFrom("graphics", "par")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
        user system elapsed
estLODR 5.53   0.04    5.56
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
        user system elapsed
estLODR 7.59   0.01    7.61
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/erccdashboard.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'erccdashboard' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'erccdashboard'
    finding HTML links ... done
    ERCC                                    html  
    ERCCDef                                 html  
    ERCCMix1and2                            html  
    MET.CTL.countDat                        html  
    MET.CTL.totalReads                      html  
    SEQC.Example                            html  
    UHRR.HBRR.arrayDat                      html  
    UHRR.HBRR.countDat                      html  
    UHRR.HBRR.totalReads                    html  
    annotLODR                               html  
    dynRangePlot                            html  
    erccROC                                 html  
    estLODR                                 html  
    est_r_m                                 html  
    geneExprTest                            html  
    initDat                                 html  
    maSignal                                html  
    runDashboard                            html  
    saveERCCPlots                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'erccdashboard' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'erccdashboard' as erccdashboard_1.12.1.zip
* DONE (erccdashboard)
In R CMD INSTALL
In R CMD INSTALL