Sergio Picart-Armada
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/diffuStats |
| Branch: RELEASE_3_6 |
| Last Commit: f79317a |
| Last Changed Date: 2017-10-30 12:41:33 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:16:28 -0400 (Thu, 12 Apr 2018).
| Package 368/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| diffuStats 0.102.0 Sergio Picart-Armada
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: diffuStats |
| Version: 0.102.0 |
| Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings diffuStats_0.102.0.tar.gz |
| StartedAt: 2018-04-11 22:57:30 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 22:59:03 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 92.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: diffuStats.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings diffuStats_0.102.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/diffuStats.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘diffuStats/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘diffuStats’ version ‘0.102.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘diffuStats’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.6-bioc/meat/diffuStats.Rcheck/00check.log’ for details.
diffuStats.Rcheck/00install.out
* installing *source* package ‘diffuStats’ ... ** libs g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/RcppParallel/include" -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/RcppParallel/include" -I/usr/local/include -fpic -g -O2 -c diffuse_parallel.cpp -o diffuse_parallel.o gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/RcppParallel/include" -I/usr/local/include -fpic -g -O2 -Wall -c init.c -o init.o g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.6-bioc/R/lib -L/usr/local/lib -o diffuStats.so RcppExports.o diffuse_parallel.o init.o -L/home/biocbuild/bbs-3.6-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.6-bioc/meat/diffuStats.Rcheck/diffuStats/libs ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (diffuStats)
diffuStats.Rcheck/tests/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(diffuStats)
>
> test_check("diffuStats")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 208 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
28.444 0.656 13.685
diffuStats.Rcheck/diffuStats-Ex.timings
| name | user | system | elapsed | |
| checks | 0.536 | 0.024 | 0.587 | |
| connect_undirected_graph | 0.168 | 0.000 | 0.181 | |
| diffuse | 3.572 | 0.112 | 3.650 | |
| diffuse_mc | 0.260 | 0.032 | 0.220 | |
| diffuse_raw | 0.016 | 0.000 | 0.014 | |
| generate_graph | 0.160 | 0.008 | 0.182 | |
| generate_input | 0.088 | 0.000 | 0.091 | |
| is_kernel | 0.008 | 0.000 | 0.009 | |
| kernels | 0.028 | 0.000 | 0.045 | |
| largest_cc | 0.016 | 0.000 | 0.016 | |
| metric_auc | 0.336 | 0.000 | 0.337 | |
| named.list | 0.000 | 0.000 | 0.001 | |
| perf | 0.224 | 0.000 | 0.222 | |
| perf_eval | 0.056 | 0.000 | 0.055 | |
| perf_wilcox | 0.040 | 0.000 | 0.042 | |
| scores2colours | 0.004 | 0.000 | 0.002 | |
| scores2shapes | 0 | 0 | 0 | |
| to_list | 0.000 | 0.004 | 0.002 | |
| to_x_from_list | 0.004 | 0.000 | 0.002 | |
| which_format | 0.000 | 0.000 | 0.001 | |