Kieran O'Neill
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/contiBAIT |
| Branch: RELEASE_3_6 |
| Last Commit: ef92133 |
| Last Changed Date: 2017-10-30 12:41:13 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:27:29 -0400 (Thu, 12 Apr 2018).
| Package 288/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| contiBAIT 1.6.0 Kieran O'Neill
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | WARNINGS | OK | |
| Package: contiBAIT |
| Version: 1.6.0 |
| Command: cd contiBAIT.buildbin-libdir/contiBAIT && zip -r ../../contiBAIT_1.6.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:32:17 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:32:55 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 37.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: contiBAIT_1.6.0.zip |
| PackageFileSize: 9.089 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd contiBAIT.buildbin-libdir/contiBAIT && zip -r ../../contiBAIT_1.6.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: data/ (372 bytes security) (stored 0%) adding: data/exampleChrTable.rda (332 bytes security) (stored 0%) adding: data/exampleContigOrder.rda (332 bytes security) (stored 0%) adding: data/exampleCrickFreq.rda (332 bytes security) (deflated 8%) adding: data/exampleDividedChr.rda (332 bytes security) (deflated 4%) adding: data/exampleLGList.rda (332 bytes security) (stored 0%) adding: data/exampleLibList.rda (332 bytes security) (stored 0%) adding: data/exampleReadCounts.rda (332 bytes security) (stored 0%) adding: data/exampleStrandFreq.rda (332 bytes security) (deflated 0%) adding: data/exampleWatsonFreq.rda (332 bytes security) (deflated 8%) adding: data/exampleWCMatrix.rda (332 bytes security) (stored 0%) adding: DESCRIPTION (332 bytes security) (deflated 46%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/contiBAIT.pdf (332 bytes security) (deflated 24%) adding: doc/contiBAIT.R (332 bytes security) (deflated 82%) adding: doc/contiBAIT.Rnw (332 bytes security) (deflated 67%) adding: doc/index.html (332 bytes security) (deflated 58%) adding: examples/ (372 bytes security) (stored 0%) adding: examples/BAIT.R (332 bytes security) (deflated 16%) adding: examples/barplotLinkageGroupCalls.R (332 bytes security) (deflated 33%) adding: examples/clusterContigs.R (332 bytes security) (deflated 39%) adding: examples/contiBAIT.R (332 bytes security) (deflated 42%) adding: examples/findSimilarLibraries.R (332 bytes security) (deflated 50%) adding: examples/ideogramPlot.R (332 bytes security) (deflated 51%) adding: examples/makeBoxPlot.R (332 bytes security) (deflated 36%) adding: examples/makeChrTable.R (332 bytes security) (deflated 36%) adding: examples/mapGapFromOverlap.R (332 bytes security) (deflated 38%) adding: examples/orderAllLinkageGroups.R (332 bytes security) (deflated 46%) adding: examples/plotContigOrder.R (332 bytes security) (deflated 30%) adding: examples/plotLGDistances.R (332 bytes security) (deflated 53%) adding: examples/plotWCdistribution.R (332 bytes security) (deflated 15%) adding: examples/preprocessStrandTable.R (332 bytes security) (deflated 21%) adding: examples/reorientAndMergeLGs.R (332 bytes security) (deflated 39%) adding: examples/strandSeqFreqTable.R (332 bytes security) (deflated 38%) adding: examples/thoroughBed.R (332 bytes security) (deflated 39%) adding: examples/writeBed.R (332 bytes security) (deflated 16%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/StrandSeqTestData_1.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_10.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_11.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_12.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_13.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_14.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_15.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_16.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_17.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_18.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_19.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_2.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_20.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_21.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_22.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_23.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_24.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_25.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_26.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_27.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_28.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_29.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_3.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_30.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_31.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_32.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_33.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_34.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_35.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_4.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_5.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_6.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_7.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_8.bam (332 bytes security) (deflated 0%) adding: extdata/StrandSeqTestData_9.bam (332 bytes security) (deflated 0%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 84%) adding: help/contiBAIT.rdb (332 bytes security) (deflated 3%) adding: help/contiBAIT.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 84%) adding: html/BAIT.html (332 bytes security) (deflated 57%) adding: html/barplotLinkageGroupCalls-LinkageGroupList-ChrTable-method.html (332 bytes security) (deflated 57%) adding: html/ChrTable.html (332 bytes security) (deflated 49%) adding: html/clusterContigs-StrandStateMatrix-method.html (332 bytes security) (deflated 60%) adding: html/contiBAIT.html (332 bytes security) (deflated 60%) adding: html/ContigOrdering.html (332 bytes security) (deflated 58%) adding: html/exampleChrTable.html (332 bytes security) (deflated 46%) adding: html/exampleContigOrder.html (332 bytes security) (deflated 50%) adding: html/exampleCrickFreq.html (332 bytes security) (deflated 48%) adding: html/exampleDividedChr.html (332 bytes security) (deflated 47%) adding: html/exampleLGList.html (332 bytes security) (deflated 46%) adding: html/exampleLibList.html (332 bytes security) (deflated 46%) adding: html/exampleReadCounts.html (332 bytes security) (deflated 45%) adding: html/exampleStrandFreq.html (332 bytes security) (deflated 46%) adding: html/exampleWatsonFreq.html (332 bytes security) (deflated 48%) adding: html/exampleWCMatrix.html (332 bytes security) (deflated 47%) adding: html/findSimilarLibraries.html (332 bytes security) (deflated 60%) adding: html/fixLinkageGroups.html (332 bytes security) (deflated 60%) adding: html/highlightAssemblyErrors.html (332 bytes security) (deflated 58%) adding: html/ideogramPlot-StrandReadMatrix-StrandReadMatrix-ChrTable-method.html (332 bytes security) (deflated 61%) adding: html/LibraryGroupList.html (332 bytes security) (deflated 57%) adding: html/LinkageGroupList.html (332 bytes security) (deflated 53%) adding: html/locateMisorients.html (332 bytes security) (deflated 56%) adding: html/makeBoxPlot.html (332 bytes security) (deflated 54%) adding: html/makeChrTable.html (332 bytes security) (deflated 56%) adding: html/mapGapFromOverlap.html (332 bytes security) (deflated 57%) adding: html/mergeFlankedLGs.html (332 bytes security) (deflated 59%) adding: html/orderAllLinkageGroups.html (332 bytes security) (deflated 63%) adding: html/orderContigsGreedy.html (332 bytes security) (deflated 54%) adding: html/orderContigsTSP.html (332 bytes security) (deflated 49%) adding: html/OrientationFrame.html (332 bytes security) (deflated 55%) adding: html/plotContigOrder.html (332 bytes security) (deflated 54%) adding: html/plotLGDistances-LinkageGroupList-StrandStateMatrix-method.html (332 bytes security) (deflated 59%) adding: html/plotWCdistribution-StrandFreqMatrix-method.html (332 bytes security) (deflated 53%) adding: html/preprocessStrandTable-StrandFreqMatrix-method.html (332 bytes security) (deflated 59%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/reorientAndMergeLGs.html (332 bytes security) (deflated 58%) adding: html/show-ContigOrdering-method.html (332 bytes security) (deflated 46%) adding: html/show-LibraryGroupList-method.html (332 bytes security) (deflated 46%) adding: html/show-LinkageGroupList-method.html (332 bytes security) (deflated 46%) adding: html/show-OrientationFrame-method.html (332 bytes security) (deflated 46%) adding: html/show-StrandFreqMatrix-method.html (332 bytes security) (deflated 46%) adding: html/show-StrandReadMatrix-method.html (332 bytes security) (deflated 46%) adding: html/show-StrandStateList-method.html (332 bytes security) (deflated 46%) adding: html/show-StrandStateMatrix-method.html (332 bytes security) (deflated 46%) adding: html/StrandFreqMatrix.html (332 bytes security) (deflated 51%) adding: html/StrandReadMatrix.html (332 bytes security) (deflated 50%) adding: html/strandSeqFreqTable.html (332 bytes security) (deflated 59%) adding: html/StrandStateList.html (332 bytes security) (deflated 53%) adding: html/StrandStateMatrix.html (332 bytes security) (deflated 50%) adding: html/thoroughBed.html (332 bytes security) (deflated 56%) adding: html/writeBed.html (332 bytes security) (deflated 56%) adding: INDEX (332 bytes security) (deflated 78%) adding: libs/ (372 bytes security) (stored 0%) adding: libs/i386/ (372 bytes security) (stored 0%) adding: libs/i386/contiBAIT.dll (332 bytes security) (deflated 66%) adding: libs/x64/ (372 bytes security) (stored 0%) adding: libs/x64/contiBAIT.dll (332 bytes security) (deflated 67%) adding: LICENSE (332 bytes security) (deflated 48%) adding: MD5 (332 bytes security) (deflated 55%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 69%) adding: NEWS (332 bytes security) (deflated 58%) adding: R/ (372 bytes security) (stored 0%) adding: R/contiBAIT (332 bytes security) (deflated 41%) adding: R/contiBAIT.rdb (332 bytes security) (deflated 36%) adding: R/contiBAIT.rdx (332 bytes security) (deflated 1%)