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BUILD BIN report for coMET on tokay1

This page was generated on 2018-04-12 13:25:34 -0400 (Thu, 12 Apr 2018).

Package 278/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
coMET 1.10.2
Tiphaine Martin
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/coMET
Branch: RELEASE_3_6
Last Commit: 0162ac1
Last Changed Date: 2017-11-21 11:08:39 -0400 (Tue, 21 Nov 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: coMET
Version: 1.10.2
Command: cd coMET.buildbin-libdir/coMET && zip -r ../../coMET_1.10.2.zip . & cd ../..
StartedAt: 2018-04-12 04:31:52 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 04:32:35 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 42.9 seconds
RetCode: 0
Status:  OK  
PackageFile: coMET_1.10.2.zip
PackageFileSize: 37.58 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd coMET.buildbin-libdir/coMET && zip -r ../../coMET_1.10.2.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (332 bytes security) (deflated 70%)
  adding: data/ (372 bytes security) (stored 0%)
  adding: data/allIG.rda (332 bytes security) (deflated 0%)
  adding: data/allIGtrack.rda (332 bytes security) (deflated 0%)
  adding: data/allimprintedIG.rda (332 bytes security) (deflated 0%)
  adding: data/allimprintedIGtrack.rda (332 bytes security) (deflated 0%)
  adding: data/BindingMotifAll.rda (332 bytes security) (stored 0%)
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  adding: data/chipTFtrack.rda (332 bytes security) (deflated 3%)
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  adding: data/ClinVarCnvTrack.rda (332 bytes security) (stored 0%)
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  adding: data/CoreillCNVTrack.rda (332 bytes security) (stored 0%)
  adding: data/coreilVarianttrack.rda (332 bytes security) (stored 0%)
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  adding: data/cpgIslandsUCSC.rda (332 bytes security) (stored 0%)
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  adding: data/gadtrack.rda (332 bytes security) (stored 0%)
  adding: data/gcContent.rda (332 bytes security) (deflated 13%)
  adding: data/gctrack.rda (332 bytes security) (deflated 14%)
  adding: data/geneENSEMBLtrack.rda (332 bytes security) (deflated 0%)
  adding: data/geneNameEnsembl.rda (332 bytes security) (stored 0%)
  adding: data/GeneReviewsTrack.rda (332 bytes security) (stored 0%)
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  adding: data/genesENSEMBL.rda (332 bytes security) (deflated 0%)
  adding: data/genesGencodetrack.rda (332 bytes security) (deflated 0%)
  adding: data/genesNameENSEMBL.rda (332 bytes security) (stored 0%)
  adding: data/genesUcsctrack.rda (332 bytes security) (stored 0%)
  adding: data/genetrack4psiGTEX.rda (332 bytes security) (deflated 0%)
  adding: data/genetrack4RM.rda (332 bytes security) (deflated 0%)
  adding: data/grtrack4eGTex.rda (332 bytes security) (deflated 0%)
  adding: data/GWASTrack.rda (332 bytes security) (stored 0%)
  adding: data/histonalltrack.rda (332 bytes security) (deflated 2%)
  adding: data/histoneonetrack.rda (332 bytes security) (stored 0%)
  adding: data/imprintedGenesGTEx.rda (332 bytes security) (stored 0%)
  adding: data/interestGenesENSEMBL.rda (332 bytes security) (deflated 0%)
  adding: data/interestgenesENSMBLtrack.rda (332 bytes security) (deflated 0%)
  adding: data/interestTranscriptENSEMBL.rda (332 bytes security) (deflated 0%)
  adding: data/interesttransENSMBLtrack.rda (332 bytes security) (deflated 0%)
  adding: data/ISCAtrack.rda (332 bytes security) (stored 0%)
  adding: data/ISCAtrack_Grch38.rda (332 bytes security) (stored 0%)
  adding: data/knownGenesUCSC.rda (332 bytes security) (stored 0%)
  adding: data/matrix_HiC_Rao.rda (332 bytes security) (stored 0%)
  adding: data/metQTLSingle.rda (332 bytes security) (stored 0%)
  adding: data/metQTLTrackAll.rda (332 bytes security) (stored 0%)
  adding: data/metQTLTrackMultiple.rda (332 bytes security) (stored 0%)
  adding: data/metQTLTrackSingle.rda (332 bytes security) (stored 0%)
  adding: data/miRNATargetRegionsBiomart.rda (332 bytes security) (stored 0%)
  adding: data/miRNATargetRegionsBiomartTrack.rda (332 bytes security) (stored 0%)
  adding: data/OtherRegulatoryRegionsAll.rda (332 bytes security) (stored 0%)
  adding: data/OtherRegulatoryRegionsSingle.rda (332 bytes security) (stored 0%)
  adding: data/otherRegulatoryRegionsTrackAll.rda (332 bytes security) (stored 0%)
  adding: data/otherRegulatoryRegionsTrackSingle.rda (332 bytes security) (stored 0%)
  adding: data/PancreasIG.rda (332 bytes security) (deflated 0%)
  adding: data/PancreasIGtrack.rda (332 bytes security) (deflated 0%)
  adding: data/PancreasimprintedIG.rda (332 bytes security) (stored 0%)
  adding: data/PancreasimprintedIGtrack.rda (332 bytes security) (stored 0%)
  adding: data/promRMtrack.rda (332 bytes security) (deflated 0%)
  adding: data/promRMtrackE063.rda (332 bytes security) (deflated 0%)
  adding: data/psiGTex.rda (332 bytes security) (deflated 3%)
  adding: data/psiGTexTrackall.rda (332 bytes security) (deflated 3%)
  adding: data/psiGTexTrackSNP.rda (332 bytes security) (deflated 1%)
  adding: data/refGenesUCSC.rda (332 bytes security) (stored 0%)
  adding: data/regulationENSEMBLtrack.rda (332 bytes security) (stored 0%)
  adding: data/RegulatoryEvidenceBiomartAll.rda (332 bytes security) (stored 0%)
  adding: data/RegulatoryEvidenceBiomartMultiple.rda (332 bytes security) (stored 0%)
  adding: data/RegulatoryEvidenceBiomartSingle.rda (332 bytes security) (deflated 2%)
  adding: data/regulatoryEvidenceBiomartTrackAll.rda (332 bytes security) (stored 0%)
  adding: data/regulatoryEvidenceBiomartTrackMultiple.rda (332 bytes security) (stored 0%)
  adding: data/regulatoryEvidenceBiomartTrackSingle.rda (332 bytes security) (stored 0%)
  adding: data/RegulatoryFeaturesBiomartAll.rda (332 bytes security) (stored 0%)
  adding: data/RegulatoryFeaturesBiomartMultiple.rda (332 bytes security) (stored 0%)
  adding: data/RegulatoryFeaturesBiomartSingle.rda (332 bytes security) (stored 0%)
  adding: data/regulatoryFeaturesBiomartTrackAll.rda (332 bytes security) (stored 0%)
  adding: data/regulatoryFeaturesBiomartTrackMultiple.rda (332 bytes security) (stored 0%)
  adding: data/regulatoryFeaturesBiomartTrackSingle.rda (332 bytes security) (stored 0%)
  adding: data/RegulatorySegmentsBiomartAll.rda (332 bytes security) (stored 0%)
  adding: data/RegulatorySegmentsBiomartMultiple.rda (332 bytes security) (stored 0%)
  adding: data/RegulatorySegmentsBiomartSingle.rda (332 bytes security) (stored 0%)
  adding: data/regulatorySegmentsBiomartTrackAll.rda (332 bytes security) (stored 0%)
  adding: data/regulatorySegmentsBiomartTrackMultiple.rda (332 bytes security) (stored 0%)
  adding: data/regulatorySegmentsBiomartTrackSingle.rda (332 bytes security) (stored 0%)
  adding: data/repeatMaskerTrack.rda (332 bytes security) (stored 0%)
  adding: data/SegmentalDupsUCSC.rda (332 bytes security) (stored 0%)
  adding: data/snpBiomart.rda (332 bytes security) (stored 0%)
  adding: data/snpBiomarttrack.rda (332 bytes security) (stored 0%)
  adding: data/snptrack.rda (332 bytes security) (stored 0%)
  adding: data/snpUCSCtrack.rda (332 bytes security) (deflated 1%)
  adding: data/StomachIG.rda (332 bytes security) (stored 0%)
  adding: data/StomachIGtrack.rda (332 bytes security) (stored 0%)
  adding: data/strucBiomarttrack.rda (332 bytes security) (stored 0%)
  adding: data/structureBiomart.rda (332 bytes security) (stored 0%)
  adding: data/tfbsFANTOMtrack.rda (332 bytes security) (stored 0%)
  adding: data/transENSMBLtrack.rda (332 bytes security) (deflated 0%)
  adding: data/xenogenestrack.rda (332 bytes security) (stored 0%)
  adding: data/xenorefGenesUCSC.rda (332 bytes security) (stored 0%)
  adding: DESCRIPTION (332 bytes security) (deflated 49%)
  adding: doc/ (372 bytes security) (stored 0%)
  adding: doc/coMET.pdf (332 bytes security) (deflated 42%)
  adding: doc/coMET.R (332 bytes security) (deflated 83%)
  adding: doc/coMET.Rnw (332 bytes security) (deflated 75%)
  adding: doc/index.html (332 bytes security) (deflated 57%)
  adding: extdata/ (372 bytes security) (stored 0%)
  adding: extdata/config_cyp1b1_zoom.txt (332 bytes security) (deflated 54%)
  adding: extdata/config_cyp1b1_zoom_4comet.txt (332 bytes security) (deflated 46%)
  adding: extdata/config_cyp1b1_zoom_4cometnopval.txt (332 bytes security) (deflated 40%)
  adding: extdata/config_cyp1b1_zoom_4cometnopval_Grch38.txt (332 bytes security) (deflated 47%)
  adding: extdata/config_cyp1b1_zoom_4nomatrix.txt (332 bytes security) (deflated 47%)
  adding: extdata/config_cyp1b1_zoom_4nomatrix_Grch38.txt (332 bytes security) (deflated 47%)
  adding: extdata/config_cyp1b1_zoom_4webserver.txt (332 bytes security) (deflated 46%)
  adding: extdata/config_cyp1b1_zoom_4webserver_Grch38.txt (332 bytes security) (deflated 46%)
  adding: extdata/config_gata55_larger_article.txt (332 bytes security) (deflated 54%)
  adding: extdata/config_gata55_larger_article_rev.txt (332 bytes security) (deflated 54%)
  adding: extdata/cyp1b1_infofile.bed (332 bytes security) (deflated 64%)
  adding: extdata/cyp1b1_infofile.txt (332 bytes security) (deflated 53%)
  adding: extdata/cyp1b1_infofile_bed.txt (332 bytes security) (deflated 64%)
  adding: extdata/cyp1b1_infofile_bed_v2.bed (332 bytes security) (deflated 70%)
  adding: extdata/cyp1b1_infofile_bed_v2.txt (332 bytes security) (deflated 70%)
  adding: extdata/cyp1b1_infofile_bed_v2_hg38.bed (332 bytes security) (deflated 79%)
  adding: extdata/cyp1b1_infofile_bed_v3.bed (332 bytes security) (deflated 75%)
  adding: extdata/cyp1b1_infofile_bed_v3.txt (332 bytes security) (deflated 80%)
  adding: extdata/cyp1b1_infofile_bed_v3_hg38.bed (332 bytes security) (deflated 74%)
  adding: extdata/cyp1b1_infofile_exprGene_region.txt (332 bytes security) (deflated 45%)
  adding: extdata/cyp1b1_infofile_exprGene_region_Grch38.txt (332 bytes security) (deflated 41%)
  adding: extdata/cyp1b1_infofile_exprGene_region_v2.csv (332 bytes security) (deflated 45%)
  adding: extdata/cyp1b1_infofile_Grch38.txt (332 bytes security) (deflated 55%)
  adding: extdata/cyp1b1_res37_cormatrix_list_BH05.txt (332 bytes security) (deflated 57%)
  adding: extdata/cyp1b1_res37_rawMatrix.txt (332 bytes security) (deflated 54%)
  adding: extdata/cyp1b1_zoom_plus_name_expr.pdf (332 bytes security) (deflated 9%)
  adding: extdata/datalist (332 bytes security) (deflated 32%)
  adding: extdata/ENCODE/ (372 bytes security) (stored 0%)
  adding: extdata/ENCODE/motifs1000_matches_ENCODE.txt (332 bytes security) (deflated 77%)
  adding: extdata/ENCODE/TFmotifs_colors.csv (332 bytes security) (deflated 27%)
  adding: extdata/eQTL.BED (332 bytes security) (deflated 73%)
  adding: extdata/FANTOM/ (372 bytes security) (stored 0%)
  adding: extdata/FANTOM/Fantom_hg19.AP1_MA0099.2.sites_example970.txt (332 bytes security) (deflated 80%)
  adding: extdata/FANTOM/human_permissive_enhancers_phase_1_and_2_example970.bed (332 bytes security) (deflated 68%)
  adding: extdata/gata4_55probes_info.txt (332 bytes security) (deflated 54%)
  adding: extdata/gata4_55probes_rawMatrix.txt (332 bytes security) (deflated 56%)
  adding: extdata/gata4_55probes_residuals.txt (332 bytes security) (deflated 56%)
  adding: extdata/gata4_95probes_info.txt (332 bytes security) (deflated 54%)
  adding: extdata/gata_comet_55probes_large_article.eps (332 bytes security) (deflated 92%)
  adding: extdata/gata_comet_55probes_large_article_gene.eps (332 bytes security) (deflated 92%)
  adding: extdata/gata_comet_55probes_large_article_rev.eps (332 bytes security) (deflated 92%)
  adding: extdata/GTEX/ (372 bytes security) (stored 0%)
  adding: extdata/GTEX/eQTL_Uterus_Analysis_extract100.snpgenes (332 bytes security) (deflated 92%)
  adding: extdata/GTEX/gencode.v19.genes.patched_contigs.gtf (332 bytes security) (deflated 95%)
  adding: extdata/GTEX/GTEx_imprinted_genes_v3_2015.csv (332 bytes security) (deflated 86%)
  adding: extdata/GTEX/psiQTL_Assoc-total.AdiposeTissue.txt (332 bytes security) (deflated 74%)
  adding: extdata/GTEX/sQTLs-Blood-sQTLseekeR-FDR05.tsv (332 bytes security) (deflated 86%)
  adding: extdata/GTEX/sQTL_HeartLeftVentricle.Altrans.FDR05.bestPerLink (332 bytes security) (deflated 87%)
  adding: extdata/HiC/ (372 bytes security) (stored 0%)
  adding: extdata/HiC/chr1_1mb.KRnorm (332 bytes security) (deflated 51%)
  adding: extdata/HiC/chr1_1mb.RAWobserved (332 bytes security) (deflated 81%)
  adding: extdata/HiC/chr1_1mb_example961.RAWobserved (332 bytes security) (deflated 69%)
  adding: extdata/JpegTables/ (372 bytes security) (stored 0%)
  adding: extdata/JpegTables/bindingMotifBiomart.jpg (332 bytes security) (deflated 9%)
  adding: extdata/JpegTables/BindingMotifsBiomart.jpg (332 bytes security) (deflated 40%)
  adding: extdata/JpegTables/ChromHMM.jpg (332 bytes security) (deflated 26%)
  adding: extdata/JpegTables/ChromHMM_coMET.jpg (332 bytes security) (deflated 44%)
  adding: extdata/JpegTables/ChromHMM_UCSC.jpg (332 bytes security) (deflated 37%)
  adding: extdata/JpegTables/eQTL.jpg (332 bytes security) (deflated 48%)
  adding: extdata/JpegTables/ISCATrack.jpg (332 bytes security) (deflated 36%)
  adding: extdata/JpegTables/ISCATrack_old.jpg (332 bytes security) (deflated 20%)
  adding: extdata/JpegTables/metQTL.jpg (332 bytes security) (deflated 48%)
  adding: extdata/JpegTables/OtherRegulatoryRegions.jpg (332 bytes security) (deflated 46%)
  adding: extdata/JpegTables/RegulatoryElementsENSEMBL.jpg (332 bytes security) (deflated 35%)
  adding: extdata/JpegTables/RegulatoryEvidence_1.jpg (332 bytes security) (deflated 56%)
  adding: extdata/JpegTables/RegulatoryEvidence_2.jpg (332 bytes security) (deflated 56%)
  adding: extdata/JpegTables/RegulatoryEvidence_3.jpg (332 bytes security) (deflated 58%)
  adding: extdata/JpegTables/RegulatoryFeaturesBiomart.jpg (332 bytes security) (deflated 43%)
  adding: extdata/JpegTables/RegulatorySegmentsBiomart.jpg (332 bytes security) (deflated 37%)
  adding: extdata/JpegTables/RoadMap15_RoadMap.jpg (332 bytes security) (deflated 36%)
  adding: extdata/JpegTables/RoadMap18_coMET.jpg (332 bytes security) (deflated 41%)
  adding: extdata/JpegTables/RoadMap18_RoadMap.jpg (332 bytes security) (deflated 35%)
  adding: extdata/JpegTables/RoadMap25_coMET.jpg (332 bytes security) (deflated 37%)
  adding: extdata/JpegTables/RoadMap25_RoadMap.jpg (332 bytes security) (deflated 44%)
  adding: extdata/JpegTables/structureBiomart.jpg (332 bytes security) (deflated 43%)
  adding: extdata/metQTL.BED (332 bytes security) (deflated 73%)
  adding: extdata/RoadMap/ (372 bytes security) (stored 0%)
  adding: extdata/RoadMap/E063_15_coreMarks_mnemonics.bed (332 bytes security) (deflated 60%)
  adding: extdata/RoadMap/regions_dyadic_E001.bed (332 bytes security) (deflated 72%)
  adding: extdata/RoadMap/regions_prom_E001.bed (332 bytes security) (deflated 46%)
  adding: extdata/RoadMap/regions_prom_E063.bed (332 bytes security) (deflated 32%)
  adding: help/ (372 bytes security) (stored 0%)
  adding: help/aliases.rds (332 bytes security) (stored 0%)
  adding: help/AnIndex (332 bytes security) (deflated 79%)
  adding: help/coMET.rdb (332 bytes security) (deflated 2%)
  adding: help/coMET.rdx (332 bytes security) (deflated 1%)
  adding: help/paths.rds (332 bytes security) (stored 0%)
  adding: html/ (372 bytes security) (stored 0%)
  adding: html/00Index.html (332 bytes security) (deflated 80%)
  adding: html/bindingMotifsBiomart_ENSEMBL.html (332 bytes security) (deflated 67%)
  adding: html/check.configVar.cometlist.html (332 bytes security) (deflated 53%)
  adding: html/check.configVar.html (332 bytes security) (deflated 50%)
  adding: html/check.format.mydata.html (332 bytes security) (deflated 53%)
  adding: html/ChIPTF_ENCODE.html (332 bytes security) (deflated 60%)
  adding: html/chromatinHMMAll_UCSC.html (332 bytes security) (deflated 62%)
  adding: html/chromatinHMMOne_UCSC.html (332 bytes security) (deflated 59%)
  adding: html/chromHMM_RoadMap.html (332 bytes security) (deflated 68%)
  adding: html/chrUCSC2ENSEMBL.html (332 bytes security) (deflated 51%)
  adding: html/ClinVarCnv_UCSC.html (332 bytes security) (deflated 59%)
  adding: html/ClinVarMain_UCSC.html (332 bytes security) (deflated 60%)
  adding: html/coMET-package.html (332 bytes security) (deflated 65%)
  adding: html/comet.html (332 bytes security) (deflated 76%)
  adding: html/comet.list.html (332 bytes security) (deflated 63%)
  adding: html/comet.web.html (332 bytes security) (deflated 75%)
  adding: html/compute.cormatrix.html (332 bytes security) (deflated 52%)
  adding: html/CoreillCNV_UCSC.html (332 bytes security) (deflated 59%)
  adding: html/COSMIC_UCSC.html (332 bytes security) (deflated 59%)
  adding: html/cpgIslands_UCSC.html (332 bytes security) (deflated 55%)
  adding: html/cpgPvalue.html (332 bytes security) (deflated 60%)
  adding: html/create.color.bar.html (332 bytes security) (deflated 63%)
  adding: html/create.color.list.html (332 bytes security) (deflated 51%)
  adding: html/create.color.list.large.html (332 bytes security) (deflated 52%)
  adding: html/create.symbol.list.html (332 bytes security) (deflated 60%)
  adding: html/create.symbol.list.large.html (332 bytes security) (deflated 61%)
  adding: html/create.tracks.user.html (332 bytes security) (deflated 51%)
  adding: html/create.tracks.web.html (332 bytes security) (deflated 51%)
  adding: html/createList.trackUser.html (332 bytes security) (deflated 52%)
  adding: html/datasets.html (332 bytes security) (deflated 39%)
  adding: html/dgfootprints_RoadMap.html (332 bytes security) (deflated 59%)
  adding: html/DNaseI_FANTOM.html (332 bytes security) (deflated 58%)
  adding: html/DNaseI_RoadMap.html (332 bytes security) (deflated 60%)
  adding: html/DNAse_UCSC.html (332 bytes security) (deflated 57%)
  adding: html/draw.legend.html (332 bytes security) (deflated 50%)
  adding: html/draw.name.genes.web.html (332 bytes security) (deflated 50%)
  adding: html/draw.name.tracks.web.html (332 bytes security) (deflated 52%)
  adding: html/draw.plot.annotation.html (332 bytes security) (deflated 51%)
  adding: html/draw.plot.axis.data.html (332 bytes security) (deflated 53%)
  adding: html/draw.plot.comet.html (332 bytes security) (deflated 52%)
  adding: html/draw.plot.comet.nopval.html (332 bytes security) (deflated 53%)
  adding: html/draw.plot.comet.web.html (332 bytes security) (deflated 53%)
  adding: html/draw.plot.cormatrix.plot.html (332 bytes security) (deflated 52%)
  adding: html/draw.plot.grid.mydata.html (332 bytes security) (deflated 51%)
  adding: html/draw.plot.grid.mydata.large.html (332 bytes security) (deflated 52%)
  adding: html/draw.plot.grid.mydata.names.html (332 bytes security) (deflated 51%)
  adding: html/draw.plot.grid.setup.html (332 bytes security) (deflated 50%)
  adding: html/draw.plot.linesconnection.html (332 bytes security) (deflated 54%)
  adding: html/draw.plot.mydata.ggbio.html (332 bytes security) (deflated 54%)
  adding: html/eQTL.html (332 bytes security) (deflated 67%)
  adding: html/eQTL_GTEx.html (332 bytes security) (deflated 62%)
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