Thomas J. Hardcastle
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/clusterSeq |
| Branch: RELEASE_3_6 |
| Last Commit: 48032f4 |
| Last Changed Date: 2017-10-30 12:41:24 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:29:09 -0400 (Thu, 12 Apr 2018).
| Package 251/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| clusterSeq 1.2.0 Thomas J. Hardcastle
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ WARNINGS ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: clusterSeq |
| Version: 1.2.0 |
| Command: rm -rf clusterSeq.buildbin-libdir clusterSeq.Rcheck && mkdir clusterSeq.buildbin-libdir clusterSeq.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=clusterSeq.buildbin-libdir clusterSeq_1.2.0.tar.gz >clusterSeq.Rcheck\00install.out 2>&1 && cp clusterSeq.Rcheck\00install.out clusterSeq-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=clusterSeq.buildbin-libdir --install="check:clusterSeq-install.out" --force-multiarch --no-vignettes --timings clusterSeq_1.2.0.tar.gz |
| StartedAt: 2018-04-11 23:00:56 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 23:17:31 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 994.9 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: clusterSeq.Rcheck |
| Warnings: 1 |
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### Running command:
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### rm -rf clusterSeq.buildbin-libdir clusterSeq.Rcheck && mkdir clusterSeq.buildbin-libdir clusterSeq.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=clusterSeq.buildbin-libdir clusterSeq_1.2.0.tar.gz >clusterSeq.Rcheck\00install.out 2>&1 && cp clusterSeq.Rcheck\00install.out clusterSeq-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=clusterSeq.buildbin-libdir --install="check:clusterSeq-install.out" --force-multiarch --no-vignettes --timings clusterSeq_1.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/clusterSeq.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'clusterSeq/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'clusterSeq' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'clusterSeq' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/associatePosteriors.Rd:19: missing file link 'countData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/associatePosteriors.Rd:33: missing file link 'countData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/cD.ratThymus-data.Rd:9: missing file link 'countData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/cD.ratThymus-data.Rd:19: missing file link 'countData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/cD.ratThymus-data.Rd:17: missing file link 'countData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/kCluster.Rd:20: missing file link 'countData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/kCluster.Rd:70: missing file link 'countData'
See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/clusterSeq.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
makeClustersFF 7.94 0.06 61.67
clusterSeq-package 1.59 0.20 76.69
kCluster 1.16 0.13 107.32
wallace 1.03 0.07 57.23
makeClusters 0.68 0.09 65.74
associatePosteriors 0.47 0.03 16.01
plotCluster 0.38 0.03 12.66
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
makeClustersFF 8.39 0.02 71.53
clusterSeq-package 2.72 0.22 106.11
kCluster 2.05 0.16 126.25
wallace 1.16 0.08 62.48
associatePosteriors 0.94 0.01 16.61
plotCluster 0.72 0.03 15.11
makeClusters 0.70 0.04 73.85
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/clusterSeq.Rcheck/00check.log'
for details.
clusterSeq.Rcheck/00install.out
install for i386
* installing *source* package 'clusterSeq' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'clusterSeq'
finding HTML links ... done
associatePosteriors html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/associatePosteriors.Rd:19: missing file link 'countData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/associatePosteriors.Rd:33: missing file link 'countData'
cD.ratThymus-data html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/cD.ratThymus-data.Rd:9: missing file link 'countData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/cD.ratThymus-data.Rd:19: missing file link 'countData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/cD.ratThymus-data.Rd:17: missing file link 'countData'
clusterSeq-package html
kCluster html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/kCluster.Rd:20: missing file link 'countData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpWaK3UX/R.INSTALLc483df87db6/clusterSeq/man/kCluster.Rd:70: missing file link 'countData'
makeClusters html
makeClustersFF html
plotCluster html
ratThymus-data html
wallace html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'clusterSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'clusterSeq' as clusterSeq_1.2.0.zip
* DONE (clusterSeq)
In R CMD INSTALL
In R CMD INSTALL
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clusterSeq.Rcheck/examples_i386/clusterSeq-Ex.timings
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clusterSeq.Rcheck/examples_x64/clusterSeq-Ex.timings
|