Jack Fu
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/ballgown |
| Branch: RELEASE_3_6 |
| Last Commit: 9b2abdf |
| Last Changed Date: 2017-10-30 12:40:20 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:24:40 -0400 (Thu, 12 Apr 2018).
| Package 87/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ballgown 2.10.0 Jack Fu
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ballgown |
| Version: 2.10.0 |
| Command: rm -rf ballgown.buildbin-libdir && mkdir ballgown.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/ballgown_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=ballgown.buildbin-libdir --merge-multiarch ballgown_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL ballgown_2.10.0.zip && rm ballgown_2.10.0.tar.gz ballgown_2.10.0.zip |
| StartedAt: 2018-04-11 18:47:25 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:49:45 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 140.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf ballgown.buildbin-libdir && mkdir ballgown.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/ballgown_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=ballgown.buildbin-libdir --merge-multiarch ballgown_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL ballgown_2.10.0.zip && rm ballgown_2.10.0.tar.gz ballgown_2.10.0.zip
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install for i386
* installing *source* package 'ballgown' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'structure' in package 'ballgown'
** help
*** installing help indices
converting help for package 'ballgown'
finding HTML links ... done
annotate_assembly html
ballgown-class html
ballgown-constructor html
ballgown-package html
ballgownrsem html
bg html
checkAssembledTx html
clusterTranscripts html
collapseTranscripts html
contains html
dirs html
eexpr html
expr-replace html
expr html
exprfilter html
geneIDs html
geneNames html
getAttributeField html
getGenes html
gexpr html
gffRead html
gffReadGR html
iexpr html
indexes-replace html
indexes html
last html
mergedDate html
pData-replace html
pData html
pctOverlap html
plotLatentTranscripts html
plotMeans html
plotTranscripts html
sampleNames html
seqnames html
stattest html
structure html
subset html
tGene html
texpr html
transcriptIDs html
transcriptNames html
writeFiles html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ballgown' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ballgown' as ballgown_2.10.0.zip
* DONE (ballgown)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'ballgown' successfully unpacked and MD5 sums checked
In R CMD INSTALL