Package: bacon

Version: 1.6.0

Command: rm -rf bacon.buildbin-libdir && mkdir bacon.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh bacon_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R bacon.buildbin-libdir

StartedAt: 2018-04-12 11:07:59 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 11:08:04 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 5.5 seconds

RetCode: 0

Status:  OK

PackageFile: bacon_1.6.0.tgz

PackageFileSize: 2.307 MiB

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### Running command:
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###   rm -rf bacon.buildbin-libdir && mkdir bacon.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh bacon_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R bacon.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=bacon.buildbin-libdir bacon_1.6.0.tar.gz'
>>>>>>> 

* installing *source* package ‘bacon’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rinit.c -o Rinit.o
Rinit.c:11:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
  NULL
  ^˜˜˜
  {   }
/usr/local/clang4/bin/../lib/clang/4.0.0/include/stddef.h:105:16: note: expanded from macro 'NULL'
#  define NULL ((void*)0)
               ^˜˜˜˜˜˜˜˜˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c bacon.c -o bacon.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o bacon.so Rinit.o bacon.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/bacon.buildbin-libdir/bacon/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (bacon)


>>>>>>> 
>>>>>>> FIXING LINKS FOR bacon.buildbin-libdir/bacon/libs//bacon.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"