Eivind Valen
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/amplican |
| Branch: RELEASE_3_6 |
| Last Commit: cc2b529 |
| Last Changed Date: 2017-10-30 12:41:46 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:30:27 -0400 (Thu, 12 Apr 2018).
| Package 40/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| amplican 1.0.0 Eivind Valen
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: amplican |
| Version: 1.0.0 |
| Command: cd amplican.buildbin-libdir/amplican && zip -r ../../amplican_1.0.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:22:56 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:23:46 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 50.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: amplican_1.0.0.zip |
| PackageFileSize: 9.01 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd amplican.buildbin-libdir/amplican && zip -r ../../amplican_1.0.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: DESCRIPTION (332 bytes security) (deflated 50%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/amplicanOverview.html (332 bytes security) (deflated 52%) adding: doc/amplicanOverview.R (332 bytes security) (deflated 77%) adding: doc/amplicanOverview.Rmd (332 bytes security) (deflated 64%) adding: doc/example_amplicon_report.html (332 bytes security) (deflated 56%) adding: doc/example_amplicon_report.R (332 bytes security) (deflated 81%) adding: doc/example_amplicon_report.Rmd (332 bytes security) (deflated 46%) adding: doc/example_barcode_report.html (332 bytes security) (deflated 64%) adding: doc/example_barcode_report.R (332 bytes security) (deflated 74%) adding: doc/example_barcode_report.Rmd (332 bytes security) (deflated 43%) adding: doc/example_group_report.html (332 bytes security) (deflated 62%) adding: doc/example_group_report.R (332 bytes security) (deflated 76%) adding: doc/example_group_report.Rmd (332 bytes security) (deflated 39%) adding: doc/example_guide_report.html (332 bytes security) (deflated 61%) adding: doc/example_guide_report.R (332 bytes security) (deflated 78%) adding: doc/example_guide_report.Rmd (332 bytes security) (deflated 39%) adding: doc/example_id_report.html (332 bytes security) (deflated 56%) adding: doc/example_id_report.R (332 bytes security) (deflated 82%) adding: doc/example_id_report.Rmd (332 bytes security) (deflated 43%) adding: doc/example_index.html (332 bytes security) (deflated 65%) adding: doc/example_index.R (332 bytes security) (deflated 79%) adding: doc/example_index.Rmd (332 bytes security) (deflated 50%) adding: doc/index.html (332 bytes security) (deflated 84%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/config.csv (332 bytes security) (deflated 65%) adding: extdata/R1_001.fastq (332 bytes security) (deflated 93%) adding: extdata/R1_002.fastq (332 bytes security) (deflated 93%) adding: extdata/R2_001.fastq (332 bytes security) (deflated 91%) adding: extdata/R2_002.fastq (332 bytes security) (deflated 93%) adding: extdata/results/ (372 bytes security) (stored 0%) adding: extdata/results/alignments/ (372 bytes security) (stored 0%) adding: extdata/results/alignments/alignments.txt (332 bytes security) (deflated 94%) adding: extdata/results/alignments/AlignmentsExperimentSet.rds (332 bytes security) (stored 0%) adding: extdata/results/alignments/events_filtered_shifted.csv (332 bytes security) (deflated 80%) adding: extdata/results/alignments/events_filtered_shifted_normalized.csv (332 bytes security) (deflated 80%) adding: extdata/results/alignments/raw_events.csv (332 bytes security) (deflated 80%) adding: extdata/results/alignments/unassigned_reads.csv (332 bytes security) (deflated 47%) adding: extdata/results/barcode_reads_filters.csv (332 bytes security) (deflated 39%) adding: extdata/results/config_summary.csv (332 bytes security) (deflated 67%) adding: extdata/results/RunParameters.txt (332 bytes security) (deflated 38%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/amplican.rdb (332 bytes security) (deflated 3%) adding: help/amplican.rdx (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 80%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 72%) adding: html/AlignmentsExperimentSet-class.html (332 bytes security) (deflated 69%) adding: html/alphabetQuality.html (332 bytes security) (deflated 47%) adding: html/amplican.html (332 bytes security) (deflated 54%) adding: html/amplicanAlign.html (332 bytes security) (deflated 64%) adding: html/amplicanConsensus.html (332 bytes security) (deflated 60%) adding: html/amplicanFilter.html (332 bytes security) (deflated 59%) adding: html/amplicanMap.html (332 bytes security) (deflated 59%) adding: html/amplicanNormalize.html (332 bytes security) (deflated 60%) adding: html/amplicanOverlap.html (332 bytes security) (deflated 59%) adding: html/amplicanPipeline.html (332 bytes security) (deflated 65%) adding: html/amplicanReport.html (332 bytes security) (deflated 64%) adding: html/amplicanSummarize.html (332 bytes security) (deflated 60%) adding: html/amplican_print_reads.html (332 bytes security) (deflated 55%) adding: html/assignedCount.html (332 bytes security) (deflated 49%) adding: html/barcodeData-set.html (332 bytes security) (deflated 51%) adding: html/barcodeData.html (332 bytes security) (deflated 48%) adding: html/checkConfigFile.html (332 bytes security) (deflated 49%) adding: html/checkFileWriteAccess.html (332 bytes security) (deflated 49%) adding: html/checkPrimers.html (332 bytes security) (deflated 53%) adding: html/checkTarget.html (332 bytes security) (deflated 47%) adding: html/comb_along.html (332 bytes security) (deflated 55%) adding: html/cumsumw.html (332 bytes security) (deflated 46%) adding: html/decode.html (332 bytes security) (deflated 47%) adding: html/defGR.html (332 bytes security) (deflated 59%) adding: html/experimentData-set.html (332 bytes security) (deflated 52%) adding: html/experimentData.html (332 bytes security) (deflated 49%) adding: html/extractEvents.html (332 bytes security) (deflated 51%) adding: html/findEOP.html (332 bytes security) (deflated 54%) adding: html/findLQR.html (332 bytes security) (deflated 52%) adding: html/findPD.html (332 bytes security) (deflated 55%) adding: html/flipRanges.html (332 bytes security) (deflated 52%) adding: html/fwdReads-set.html (332 bytes security) (deflated 53%) adding: html/fwdReads.html (332 bytes security) (deflated 48%) adding: html/getEventInfo.html (332 bytes security) (deflated 55%) adding: html/get_amplicon.html (332 bytes security) (deflated 52%) adding: html/get_left_primer.html (332 bytes security) (deflated 49%) adding: html/get_right_primer.html (332 bytes security) (deflated 50%) adding: html/goodAvgQuality.html (332 bytes security) (deflated 51%) adding: html/goodBaseQuality.html (332 bytes security) (deflated 50%) adding: html/lookupAlignment.html (332 bytes security) (deflated 52%) adding: html/makeAlignment.html (332 bytes security) (deflated 60%) adding: html/metaplot_deletions.html (332 bytes security) (deflated 63%) adding: html/metaplot_insertions.html (332 bytes security) (deflated 63%) adding: html/metaplot_mismatches.html (332 bytes security) (deflated 62%) adding: html/plot_amplicon.html (332 bytes security) (deflated 54%) adding: html/plot_cuts.html (332 bytes security) (deflated 62%) adding: html/plot_deletions.html (332 bytes security) (deflated 63%) adding: html/plot_height.html (332 bytes security) (deflated 49%) adding: html/plot_heterogeneity.html (332 bytes security) (deflated 62%) adding: html/plot_insertions.html (332 bytes security) (deflated 62%) adding: html/plot_mismatches.html (332 bytes security) (deflated 62%) adding: html/plot_variants.html (332 bytes security) (deflated 65%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/readCounts-set.html (332 bytes security) (deflated 53%) adding: html/readCounts.html (332 bytes security) (deflated 49%) adding: html/revComp.html (332 bytes security) (deflated 50%) adding: html/rveReads-set.html (332 bytes security) (deflated 53%) adding: html/rveReads.html (332 bytes security) (deflated 48%) adding: html/unassignedCount.html (332 bytes security) (deflated 49%) adding: html/unassignedData-set.html (332 bytes security) (deflated 53%) adding: html/unassignedData.html (332 bytes security) (deflated 48%) adding: html/upperGroups.html (332 bytes security) (deflated 47%) adding: html/writeAlignments.html (332 bytes security) (deflated 52%) adding: INDEX (332 bytes security) (deflated 66%) adding: MD5 (332 bytes security) (deflated 54%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 66%) adding: NEWS (332 bytes security) (deflated 27%) adding: R/ (372 bytes security) (stored 0%) adding: R/amplican (332 bytes security) (deflated 41%) adding: R/amplican.rdb (332 bytes security) (deflated 25%) adding: R/amplican.rdx (332 bytes security) (deflated 1%) adding: rmarkdown/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/amplicon_report/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/amplicon_report/skeleton/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/amplicon_report/skeleton/skeleton.Rmd (332 bytes security) (deflated 46%) adding: rmarkdown/templates/amplicon_report/template.yaml (332 bytes security) (deflated 17%) adding: rmarkdown/templates/barcode_report/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/barcode_report/skeleton/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/barcode_report/skeleton/skeleton.Rmd (332 bytes security) (deflated 43%) adding: rmarkdown/templates/barcode_report/template.yaml (332 bytes security) (deflated 15%) adding: rmarkdown/templates/group_report/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/group_report/skeleton/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/group_report/skeleton/skeleton.Rmd (332 bytes security) (deflated 39%) adding: rmarkdown/templates/group_report/template.yaml (332 bytes security) (deflated 20%) adding: rmarkdown/templates/guide_report/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/guide_report/skeleton/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/guide_report/skeleton/skeleton.Rmd (332 bytes security) (deflated 39%) adding: rmarkdown/templates/guide_report/template.yaml (332 bytes security) (deflated 14%) adding: rmarkdown/templates/id_report/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/id_report/skeleton/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/id_report/skeleton/skeleton.Rmd (332 bytes security) (deflated 43%) adding: rmarkdown/templates/id_report/template.yaml (332 bytes security) (deflated 25%) adding: rmarkdown/templates/index_report/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/index_report/skeleton/ (372 bytes security) (stored 0%) adding: rmarkdown/templates/index_report/skeleton/skeleton.Rmd (332 bytes security) (deflated 50%) adding: rmarkdown/templates/index_report/template.yaml (332 bytes security) (deflated 21%) adding: test_data/ (372 bytes security) (stored 0%) adding: test_data/test_aln.csv (332 bytes security) (deflated 86%) adding: test_data/test_cfg.csv (332 bytes security) (deflated 85%)