Robert Castelo
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/VariantFiltering |
| Branch: RELEASE_3_6 |
| Last Commit: 078aee9 |
| Last Changed Date: 2017-10-30 12:40:14 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:38:30 -0400 (Thu, 12 Apr 2018).
| Package 1444/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| VariantFiltering 1.14.0 Robert Castelo
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | [ OK ] | |
| Package: VariantFiltering |
| Version: 1.14.0 |
| Command: rm -rf VariantFiltering.buildbin-libdir && mkdir VariantFiltering.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh VariantFiltering_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R VariantFiltering.buildbin-libdir |
| StartedAt: 2018-04-12 12:22:31 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 12:23:02 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 30.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: VariantFiltering_1.14.0.tgz |
| PackageFileSize: 3.507 MiB |
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### Running command:
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### rm -rf VariantFiltering.buildbin-libdir && mkdir VariantFiltering.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh VariantFiltering_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R VariantFiltering.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=VariantFiltering.buildbin-libdir VariantFiltering_1.14.0.tar.gz'
>>>>>>>
* installing *source* package ‘VariantFiltering’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Biostrings/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Biostrings_stubs.c -o Biostrings_stubs.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Biostrings/include" -I/usr/local/include -fPIC -Wall -g -O2 -c R_init_VariantFiltering.c -o R_init_VariantFiltering.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Biostrings/include" -I/usr/local/include -fPIC -Wall -g -O2 -c methods-WeightMatrix.c -o methods-WeightMatrix.o
methods-WeightMatrix.c:99:7: warning: unused variable 'nsco' [-Wunused-variable]
int nsco = INTEGER(nscoR)[0];
^
methods-WeightMatrix.c:100:11: warning: unused variable 'scores' [-Wunused-variable]
double* scores;
^
methods-WeightMatrix.c:129:7: warning: unused variable 'nsco' [-Wunused-variable]
int nsco = INTEGER(nscoR)[0];
^
methods-WeightMatrix.c:131:11: warning: unused variable 'scores' [-Wunused-variable]
double* scores;
^
4 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o VariantFiltering.so Biostrings_stubs.o R_init_VariantFiltering.o methods-WeightMatrix.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/VariantFiltering.buildbin-libdir/VariantFiltering/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (VariantFiltering)
>>>>>>>
>>>>>>> FIXING LINKS FOR VariantFiltering.buildbin-libdir/VariantFiltering/libs//VariantFiltering.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "VariantFiltering.buildbin-libdir/VariantFiltering/libs//VariantFiltering.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "VariantFiltering.buildbin-libdir/VariantFiltering/libs//VariantFiltering.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "VariantFiltering.buildbin-libdir/VariantFiltering/libs//VariantFiltering.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "VariantFiltering.buildbin-libdir/VariantFiltering/libs//VariantFiltering.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "VariantFiltering.buildbin-libdir/VariantFiltering/libs//VariantFiltering.so"