Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:33:18 -0400 (Thu, 12 Apr 2018).
Package 1357/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Starr 1.34.0 Benedikt Zacher
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] |
Package: Starr |
Version: 1.34.0 |
Command: rm -rf Starr.buildbin-libdir && mkdir Starr.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Starr_1.34.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Starr.buildbin-libdir |
StartedAt: 2018-04-12 12:18:29 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 12:18:42 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 12.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: Starr_1.34.0.tgz |
PackageFileSize: 1.594 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Starr.buildbin-libdir && mkdir Starr.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Starr_1.34.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Starr.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Starr.buildbin-libdir Starr_1.34.0.tar.gz' >>>>>>> * installing *source* package ‘Starr’ ... creating cache ./config.cache checking how to run the C preprocessor... cc -E checking for main in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes updating cache ./config.cache creating ./config.status creating src/Makevars ** libs clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -Wall -g -O2 -c ahocorasick.c -o ahocorasick.o ahocorasick.c:8:1: warning: unused function 'kseq_rewind' [-Wunused-function] KSEQ_INIT(gzFile, gzread) ^ ./kseq.h:220:2: note: expanded from macro 'KSEQ_INIT' __KSEQ_BASIC(type_t) \ ^ ./kseq.h:152:21: note: expanded from macro '__KSEQ_BASIC' static inline void kseq_rewind(kseq_t *ks) \ ^ 1 warning generated. clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -Wall -g -O2 -c collect.c -o collect.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -Wall -g -O2 -c rm_small_peak.c -o rm_small_peak.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -Wall -g -O2 -c sort_by_genomic.c -o sort_by_genomic.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Starr.so ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.6-bioc/meat/Starr.buildbin-libdir/Starr/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Starr) >>>>>>> >>>>>>> FIXING LINKS FOR Starr.buildbin-libdir/Starr/libs//Starr.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "Starr.buildbin-libdir/Starr/libs//Starr.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "Starr.buildbin-libdir/Starr/libs//Starr.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "Starr.buildbin-libdir/Starr/libs//Starr.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "Starr.buildbin-libdir/Starr/libs//Starr.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "Starr.buildbin-libdir/Starr/libs//Starr.so"