Back to Multiple platform build/check report for BioC 3.6
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

INSTALL report for SomaticSignatures on tokay1

This page was generated on 2018-04-12 13:23:46 -0400 (Thu, 12 Apr 2018).

Package 1323/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SomaticSignatures 2.14.0
Julian Gehring
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/SomaticSignatures
Branch: RELEASE_3_6
Last Commit: b12d24f
Last Changed Date: 2017-10-30 12:40:11 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SomaticSignatures
Version: 2.14.0
Command: rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/SomaticSignatures_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=SomaticSignatures.buildbin-libdir --merge-multiarch SomaticSignatures_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.14.0.zip && rm SomaticSignatures_2.14.0.tar.gz SomaticSignatures_2.14.0.zip
StartedAt: 2018-04-11 18:56:21 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:58:14 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 112.7 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/SomaticSignatures_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=SomaticSignatures.buildbin-libdir --merge-multiarch SomaticSignatures_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.14.0.zip  && rm SomaticSignatures_2.14.0.tar.gz SomaticSignatures_2.14.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  128k  100  128k    0     0  3807k      0 --:--:-- --:--:-- --:--:-- 4433k

install for i386

* installing *source* package 'SomaticSignatures' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SomaticSignatures'
    finding HTML links ... done
    MutationalSignatures-class              html  
    SomaticSignatures-package               html  
    cluster-spetrum                         html  
    decomposition-functions                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkRFQb7/R.INSTALL10d04fdc6cf8/SomaticSignatures/man/decomposition-functions.Rd:75: missing file link 'NMF'
    gc                                      html  
    granges-utils                           html  
    finding level-2 HTML links ... done

    hs-chrs                                 html  
    kmers-data                              html  
    kmers                                   html  
    motif-functions                         html  
    mutation-context                        html  
    mutation-distribution                   html  
    mutational-normalization                html  
    mutational-plots                        html  
    mutational-signatures                   html  
    mutect                                  html  
    number-signatures                       html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkRFQb7/R.INSTALL10d04fdc6cf8/SomaticSignatures/man/number-signatures.Rd:98: missing file link 'evar'
    sca-data                                html  
    signature-plot-functions                html  
    signatures21-data                       html  
    utils                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SomaticSignatures' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SomaticSignatures' as SomaticSignatures_2.14.0.zip
* DONE (SomaticSignatures)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'SomaticSignatures' successfully unpacked and MD5 sums checked
In R CMD INSTALL