J. Toedling
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/Ringo |
| Branch: RELEASE_3_6 |
| Last Commit: 505228e |
| Last Changed Date: 2018-04-02 13:46:50 -0400 (Mon, 02 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:18:39 -0400 (Thu, 12 Apr 2018).
| Package 1180/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Ringo 1.42.1 J. Toedling
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: Ringo |
| Version: 1.42.1 |
| Command: rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/Ringo_1.42.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=Ringo.buildbin-libdir --merge-multiarch Ringo_1.42.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL Ringo_1.42.1.zip && rm Ringo_1.42.1.tar.gz Ringo_1.42.1.zip |
| StartedAt: 2018-04-11 18:33:32 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:35:08 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 96.2 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/Ringo_1.42.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=Ringo.buildbin-libdir --merge-multiarch Ringo_1.42.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL Ringo_1.42.1.zip && rm Ringo_1.42.1.tar.gz Ringo_1.42.1.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 569k 100 569k 0 0 20.0M 0 --:--:-- --:--:-- --:--:-- 23.1M
install for i386
* installing *source* package 'Ringo' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -mtune=generic -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)':
mmeansd.cpp:29:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
int * x, nval, hs, is, i;
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -mtune=generic -c mmedian.cpp -o mmedian.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c region_overlap.c -o region_overlap.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c ringo_init.c -o ringo_init.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/Ringo.buildbin-libdir/Ringo/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'ls' from package 'base' in package 'Ringo'
** help
*** installing help indices
converting help for package 'Ringo'
finding HTML links ... done
Ringo-internal html
arrayImage html
asExprSet html
autocorr html
cherByThreshold html
cherClass html
chipAlongChrom html
chipAlongChromOld html
computeRunningMedians html
compute_gc html
compute_sliding_t html
corrPlot html
exportCherList html
extractProbeAnno html
features2Probes html
findChersOnSmoothed html
ftr2xys html
getFeats html
newCER html
nimblegenNorm html
nonzero html
plotAutocorr html
plotBM html
plot_cher html
posToProbeAnnoEnvironment html
preprocess html
probeAnnoClass html
qopS4 html
quantilesOverPositions html
readNimblegen html
regionoverlap html
relateCERs html
sigGOTable html
sliding_meansd html
sliding_quantile html
twoGaussiansNull html
upperBoundNull html
validProbeAnno html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'Ringo' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -mtune=generic -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)':
mmeansd.cpp:29:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
int * x, nval, hs, is, i;
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -mtune=generic -c mmedian.cpp -o mmedian.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c region_overlap.c -o region_overlap.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c ringo_init.c -o ringo_init.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/Ringo.buildbin-libdir/Ringo/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Ringo' as Ringo_1.42.1.zip
* DONE (Ringo)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'Ringo' successfully unpacked and MD5 sums checked
In R CMD INSTALL