Marcel Ramos
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/RTCGAToolbox |
| Branch: RELEASE_3_6 |
| Last Commit: fb7b7b6 |
| Last Changed Date: 2017-10-30 12:40:51 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:26:21 -0400 (Thu, 12 Apr 2018).
| Package 1224/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RTCGAToolbox 2.8.0 Marcel Ramos
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: RTCGAToolbox |
| Version: 2.8.0 |
| Command: rm -rf RTCGAToolbox.buildbin-libdir && mkdir RTCGAToolbox.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/RTCGAToolbox_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=RTCGAToolbox.buildbin-libdir --merge-multiarch RTCGAToolbox_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL RTCGAToolbox_2.8.0.zip && rm RTCGAToolbox_2.8.0.tar.gz RTCGAToolbox_2.8.0.zip |
| StartedAt: 2018-04-11 18:40:59 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:42:02 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 62.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf RTCGAToolbox.buildbin-libdir && mkdir RTCGAToolbox.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/RTCGAToolbox_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=RTCGAToolbox.buildbin-libdir --merge-multiarch RTCGAToolbox_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL RTCGAToolbox_2.8.0.zip && rm RTCGAToolbox_2.8.0.tar.gz RTCGAToolbox_2.8.0.zip
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install for i386
* installing *source* package 'RTCGAToolbox' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'RTCGAToolbox'
finding HTML links ... done
CorResult-class html
DGEResult-class html
FirehoseCGHArray-class html
FirehoseData-class html
FirehoseGISTIC-class html
FirehoseMethylationArray-class html
FirehosemRNAArray-class html
RTCGASample html
RTCGAToolbox html
biocExtract html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpwfecdg/R.INSTALLefc7f7b49e0/RTCGAToolbox/man/biocExtract.Rd:32: missing file link 'RaggedExperiment'
getCNGECorrelation html
getData html
getDiffExpressedGenes html
getFirehoseAnalyzeDates html
getFirehoseData html
getFirehoseDatasets html
getFirehoseRunningDates html
getMutationRate html
getReport html
getSurvival html
hg19.ucsc.gene.locations html
selectType html
showResults-CorResult html
showResults-DGEResult html
showResults html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'RTCGAToolbox' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGAToolbox' as RTCGAToolbox_2.8.0.zip
* DONE (RTCGAToolbox)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'RTCGAToolbox' successfully unpacked and MD5 sums checked
In R CMD INSTALL