Package: REMP

Version: 1.2.5

Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings REMP_1.2.5.tar.gz

StartedAt: 2018-04-12 02:18:58 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 02:42:17 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 1399.2 seconds

RetCode: 0

Status:  OK

CheckDir: REMP.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings REMP_1.2.5.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/REMP.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘REMP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘REMP’ version ‘1.2.5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘REMP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
GRannot         14.676  0.288  16.364
remp            11.548  0.784  12.087
initREMP        11.348  0.648  13.771
remprofile      10.084  0.604  12.704
fetchRMSK        6.428  0.336   8.716
grooMethy        6.248  0.064   8.378
fetchRefSeqGene  3.248  0.080   5.332
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘REMP’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (REMP)

name	user	system	elapsed
GRannot	14.676	0.288	16.364
REMParcel-class	0.000	0.000	0.001
REMProduct-class	0.000	0.000	0.002
fetchRMSK	6.428	0.336	8.716
fetchRefSeqGene	3.248	0.080	5.332
findRECpG	2.164	0.296	2.487
getBackend	0.924	0.692	1.648
getGM12878	3.036	0.228	3.585
grooMethy	6.248	0.064	8.378
initREMP	11.348	0.648	13.771
options	0.000	0.000	0.002
remp	11.548	0.784	12.087
remprofile	10.084	0.604	12.704