Pedro Madrigal
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/NarrowPeaks |
| Branch: RELEASE_3_6 |
| Last Commit: af6e70f |
| Last Changed Date: 2017-10-30 12:39:38 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:35:21 -0400 (Thu, 12 Apr 2018).
| Package 929/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| NarrowPeaks 1.22.0 Pedro Madrigal
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | [ OK ] | |
| Package: NarrowPeaks |
| Version: 1.22.0 |
| Command: rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NarrowPeaks_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NarrowPeaks.buildbin-libdir |
| StartedAt: 2018-04-12 11:54:08 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 11:54:20 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 12.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: NarrowPeaks_1.22.0.tgz |
| PackageFileSize: 406.9 KiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NarrowPeaks_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NarrowPeaks.buildbin-libdir
###
##############################################################################
##############################################################################
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=NarrowPeaks.buildbin-libdir NarrowPeaks_1.22.0.tar.gz'
>>>>>>>
* installing *source* package ‘NarrowPeaks’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c wig2CSARScore.c -o wig2CSARScore.o
wig2CSARScore.c:240:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<x+span_c;i++){
˜^˜
wig2CSARScore.c:246:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<=chrL[m];i++)
˜^˜
wig2CSARScore.c:267:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<x+span_c;i++){
˜^˜
wig2CSARScore.c:273:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<=chrL[m];i++)
˜^˜
wig2CSARScore.c:352:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<start_c+span_c;i++){
˜^˜
wig2CSARScore.c:359:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<=chrL[m];i++)
˜^˜
wig2CSARScore.c:380:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<start_c+span_c;i++){
˜^˜
wig2CSARScore.c:387:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
for(i=i;i<=chrL[m];i++)
˜^˜
8 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c wig2CSARScore_R_wrapper.c -o wig2CSARScore_R_wrapper.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o NarrowPeaks.so wig2CSARScore.o wig2CSARScore_R_wrapper.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/NarrowPeaks.buildbin-libdir/NarrowPeaks/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (NarrowPeaks)
>>>>>>>
>>>>>>> FIXING LINKS FOR NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"