MSnbase 2.4.2
Laurent Gatto
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/MSnbase |
| Branch: RELEASE_3_6 |
| Last Commit: c045d65 |
| Last Changed Date: 2018-01-23 04:39:37 -0400 (Tue, 23 Jan 2018) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | ERROR | skipped | | |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |
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### Running command:
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### chmod a+r MSnbase -R && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MSnbase
###
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* checking for file 'MSnbase/DESCRIPTION' ... OK
* preparing 'MSnbase':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.6-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/mapheat-1.png" -trim "MSnbase-demo_files/figure-html/mapheat-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/mapheat-1.png" -trim "MSnbase-demo_files/figure-html/mapheat-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/map3d-1.png" -trim "MSnbase-demo_files/figure-html/map3d-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/map3d-1.png" -trim "MSnbase-demo_files/figure-html/map3d-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/map3d2-1.png" -trim "MSnbase-demo_files/figure-html/map3d2-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/map3d2-1.png" -trim "MSnbase-demo_files/figure-html/map3d2-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/spectrumPlot-1.png" -trim "MSnbase-demo_files/figure-html/spectrumPlot-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/spectrumPlot-1.png" -trim "MSnbase-demo_files/figure-html/spectrumPlot-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/msnexpPlot-1.png" -trim "MSnbase-demo_files/figure-html/msnexpPlot-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/msnexpPlot-1.png" -trim "MSnbase-demo_files/figure-html/msnexpPlot-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/chromPlot-1.png" -trim "MSnbase-demo_files/figure-html/chromPlot-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/chromPlot-1.png" -trim "MSnbase-demo_files/figure-html/chromPlot-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/idvis-1.png" -trim "MSnbase-demo_files/figure-html/idvis-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/idvis-1.png" -trim "MSnbase-demo_files/figure-html/idvis-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/fragplot-1.png" -trim "MSnbase-demo_files/figure-html/fragplot-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/fragplot-1.png" -trim "MSnbase-demo_files/figure-html/fragplot-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/spectrum-clean-plot-1.png" -trim "MSnbase-demo_files/figure-html/spectrum-clean-plot-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/spectrum-clean-plot-1.png" -trim "MSnbase-demo_files/figure-html/spectrum-clean-plot-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/preprocPlot-1.png" -trim "MSnbase-demo_files/figure-html/preprocPlot-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/preprocPlot-1.png" -trim "MSnbase-demo_files/figure-html/preprocPlot-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/quantitationPlot-1.png" -trim "MSnbase-demo_files/figure-html/quantitationPlot-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/quantitationPlot-1.png" -trim "MSnbase-demo_files/figure-html/quantitationPlot-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/miximp-1.png" -trim "MSnbase-demo_files/figure-html/miximp-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/miximp-1.png" -trim "MSnbase-demo_files/figure-html/miximp-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/normPlot-1.png" -trim "MSnbase-demo_files/figure-html/normPlot-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/normPlot-1.png" -trim "MSnbase-demo_files/figure-html/normPlot-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/cvPlot-1.png" -trim "MSnbase-demo_files/figure-html/cvPlot-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/cvPlot-1.png" -trim "MSnbase-demo_files/figure-html/cvPlot-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/msnexpNormPlot-1.png" -trim "MSnbase-demo_files/figure-html/msnexpNormPlot-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/msnexpNormPlot-1.png" -trim "MSnbase-demo_files/figure-html/msnexpNormPlot-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/compms2plot-1.png" -trim "MSnbase-demo_files/figure-html/compms2plot-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/compms2plot-1.png" -trim "MSnbase-demo_files/figure-html/compms2plot-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/dendo-1.png" -trim "MSnbase-demo_files/figure-html/dendo-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/dendo-1.png" -trim "MSnbase-demo_files/figure-html/dendo-1.png"' execution failed with error code 4
Warning: Removed 8 rows containing non-finite values (stat_boxplot).
Warning: Removed 7 rows containing non-finite values (stat_smooth).
Warning: Removed 7 rows containing missing values (geom_point).
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/incompdissPlot-1.png" -trim "MSnbase-demo_files/figure-html/incompdissPlot-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/incompdissPlot-1.png" -trim "MSnbase-demo_files/figure-html/incompdissPlot-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "MSnbase-demo_files/figure-html/plot2Davg-1.png" -trim "MSnbase-demo_files/figure-html/plot2Davg-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "MSnbase-demo_files/figure-html/plot2Davg-1.png" -trim "MSnbase-demo_files/figure-html/plot2Davg-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning: running command 'C:\Windows\system32\cmd.exe /c convert "benchmarking_files/figure-html/plot1-1.png" -trim "benchmarking_files/figure-html/plot1-1.png"' had status 4
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "benchmarking_files/figure-html/plot1-1.png" -trim "benchmarking_files/figure-html/plot1-1.png"' execution failed with error code 4
Quitting from lines 125-132 (benchmarking.Rmd)
Error: processing vignette 'benchmarking.Rmd' failed with diagnostics:
package or namespace load failed for 'microbenchmark' in inDL(x, as.logical(local), as.logical(now), ...):
unable to load shared object 'C:/Users/biocbuild/bbs-3.6-bioc/R/library/microbenchmark/libs/x64/microbenchmark.dll':
`maximal number of DLLs reached...
Execution halted