Nathan Sheffield
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/LOLA |
| Branch: RELEASE_3_6 |
| Last Commit: 0e9367e |
| Last Changed Date: 2017-10-30 12:40:54 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:26:49 -0400 (Thu, 12 Apr 2018).
| Package 757/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LOLA 1.8.0 Nathan Sheffield
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: LOLA |
| Version: 1.8.0 |
| Command: rm -rf LOLA.buildbin-libdir LOLA.Rcheck && mkdir LOLA.buildbin-libdir LOLA.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LOLA.buildbin-libdir LOLA_1.8.0.tar.gz >LOLA.Rcheck\00install.out 2>&1 && cp LOLA.Rcheck\00install.out LOLA-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=LOLA.buildbin-libdir --install="check:LOLA-install.out" --force-multiarch --no-vignettes --timings LOLA_1.8.0.tar.gz |
| StartedAt: 2018-04-12 01:03:56 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 01:07:57 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 240.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: LOLA.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### rm -rf LOLA.buildbin-libdir LOLA.Rcheck && mkdir LOLA.buildbin-libdir LOLA.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LOLA.buildbin-libdir LOLA_1.8.0.tar.gz >LOLA.Rcheck\00install.out 2>&1 && cp LOLA.Rcheck\00install.out LOLA-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=LOLA.buildbin-libdir --install="check:LOLA-install.out" --force-multiarch --no-vignettes --timings LOLA_1.8.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/LOLA.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LOLA/DESCRIPTION' ... OK
* this is package 'LOLA' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'simpleCache'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.travis.yml
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'LOLA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Authors@R field gives more than one person with maintainer role:
Nathan Sheffield [aut, cre]
Christoph Bock [cre]
Authors@R field gives no person with maintainer role, valid email
address and non-empty name.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
extractEnrichmentOverlaps 2.80 0.01 6.19
writeCombinedEnrichment 2.18 0.01 5.37
getRegionSet 1.39 0.03 5.31
redefineUserSets 1.38 0.00 5.45
getRegionFile 1.33 0.02 5.20
plotTopLOLAEnrichments 1.31 0.00 5.23
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
extractEnrichmentOverlaps 3.35 0.03 6.89
getRegionFile 1.54 0.00 6.68
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/LOLA.Rcheck/00check.log'
for details.
LOLA.Rcheck/00install.out
install for i386
* installing *source* package 'LOLA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'LOLA'
finding HTML links ... done
LOLA html
buildRestrictedUniverse html
checkUniverseAppropriateness html
cleanws html
countOverlapsAnyRev html
extractEnrichmentOverlaps html
getRegionFile html
getRegionSet html
lapplyAlias html
listRegionSets html
listToGRangesList html
loadRegionDB html
mergeRegionDBs html
nlist html
plotTopLOLAEnrichments html
readBed html
readCollection html
readCollectionAnnotation html
readCollectionFiles html
readRegionGRL html
readRegionSetAnnotation html
redefineUserSets html
replaceFileExtension html
runLOLA html
sampleGRL html
setLapplyAlias html
setSharedDataDir html
splitDataTable html
splitFileIntoCollection html
userSets html
userUniverse html
write.tsv html
writeCombinedEnrichment html
writeDataTableSplitByColumn html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'LOLA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LOLA' as LOLA_1.8.0.zip
* DONE (LOLA)
In R CMD INSTALL
In R CMD INSTALL
|
LOLA.Rcheck/tests_i386/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(LOLA)
>
> test_check("LOLA")
== testthat results ===========================================================
OK: 51 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
7.31 0.18 18.37
|
LOLA.Rcheck/tests_x64/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(LOLA)
>
> test_check("LOLA")
== testthat results ===========================================================
OK: 50 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
12.84 0.32 24.10
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LOLA.Rcheck/examples_i386/LOLA-Ex.timings
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LOLA.Rcheck/examples_x64/LOLA-Ex.timings
|