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CHECK report for GSRI on tokay1

This page was generated on 2018-04-12 13:20:13 -0400 (Thu, 12 Apr 2018).

Package 628/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSRI 2.26.0
Julian Gehring
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/GSRI
Branch: RELEASE_3_6
Last Commit: 5fb1074
Last Changed Date: 2017-10-30 12:39:29 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ WARNINGS ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GSRI
Version: 2.26.0
Command: rm -rf GSRI.buildbin-libdir GSRI.Rcheck && mkdir GSRI.buildbin-libdir GSRI.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSRI.buildbin-libdir GSRI_2.26.0.tar.gz >GSRI.Rcheck\00install.out 2>&1 && cp GSRI.Rcheck\00install.out GSRI-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=GSRI.buildbin-libdir --install="check:GSRI-install.out" --force-multiarch --no-vignettes --timings GSRI_2.26.0.tar.gz
StartedAt: 2018-04-12 00:36:44 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 00:39:22 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 158.8 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: GSRI.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GSRI.buildbin-libdir GSRI.Rcheck && mkdir GSRI.buildbin-libdir GSRI.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSRI.buildbin-libdir GSRI_2.26.0.tar.gz >GSRI.Rcheck\00install.out 2>&1 && cp GSRI.Rcheck\00install.out GSRI-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=GSRI.buildbin-libdir --install="check:GSRI-install.out" --force-multiarch --no-vignettes --timings GSRI_2.26.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/GSRI.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSRI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GSRI' version '2.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSRI' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:60: missing file link 'getGsri'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:61: missing file link 'getCdf'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:62: missing file link 'getParms'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:66: missing file link 'show'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:67: missing file link 'summary'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:68: missing file link 'readCls'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:69: missing file link 'readGct'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:80: missing file link 'getGsri'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:81: missing file link 'getCdf'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:82: missing file link 'getParms'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:86: missing file link 'show'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:87: missing file link 'summary'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:88: missing file link 'readCls'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:89: missing file link 'readGct'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:144: missing file link 'getGsri'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:145: missing file link 'getCdf'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:146: missing file link 'getParms'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:150: missing file link 'show'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:151: missing file link 'summary'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:152: missing file link 'readCls'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:153: missing file link 'readGct'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:49: missing file link 'getGsri'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:50: missing file link 'getCdf'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:51: missing file link 'getParms'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:55: missing file link 'show'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:56: missing file link 'summary'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:57: missing file link 'readCls'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:58: missing file link 'readGct'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:78: missing file link 'getGsri'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:79: missing file link 'getCdf'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:80: missing file link 'getParms'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:84: missing file link 'show'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:85: missing file link 'summary'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:86: missing file link 'readCls'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:87: missing file link 'readGct'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:228: missing file link 'getGsri'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:229: missing file link 'getCdf'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:230: missing file link 'getParms'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:234: missing file link 'show'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:235: missing file link 'summary'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:236: missing file link 'readCls'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:237: missing file link 'readGct'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:91: missing file link 'getGsri'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:92: missing file link 'getCdf'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:93: missing file link 'getParms'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:97: missing file link 'show'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:98: missing file link 'summary'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:99: missing file link 'readCls'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:100: missing file link 'readGct'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:63: missing file link 'getGsri'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:64: missing file link 'getCdf'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:65: missing file link 'getParms'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:69: missing file link 'show'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:70: missing file link 'summary'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:71: missing file link 'readCls'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:72: missing file link 'readGct'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:62: missing file link 'getGsri'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:63: missing file link 'getCdf'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:64: missing file link 'getParms'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:68: missing file link 'show'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:69: missing file link 'summary'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:70: missing file link 'readCls'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:71: missing file link 'readGct'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:97: missing file link 'getGsri'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:98: missing file link 'getCdf'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:99: missing file link 'getParms'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:103: missing file link 'show'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:104: missing file link 'summary'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:105: missing file link 'readCls'
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:106: missing file link 'readGct'
See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/GSRI.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/GSRI.Rcheck/00check.log'
for details.



Installation output

GSRI.Rcheck/00install.out


install for i386

* installing *source* package 'GSRI' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GSRI'
    finding HTML links ... done
    GSRI-internal                           html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:60: missing file link 'getGsri'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:61: missing file link 'getCdf'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:62: missing file link 'getParms'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:66: missing file link 'show'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:67: missing file link 'summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:68: missing file link 'readCls'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-internal.Rd:69: missing file link 'readGct'
    GSRI-package                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:80: missing file link 'getGsri'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:81: missing file link 'getCdf'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:82: missing file link 'getParms'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:86: missing file link 'show'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:87: missing file link 'summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:88: missing file link 'readCls'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/GSRI-package.Rd:89: missing file link 'readGct'
    Gsri-class                              html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:144: missing file link 'getGsri'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:145: missing file link 'getCdf'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:146: missing file link 'getParms'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:150: missing file link 'show'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:151: missing file link 'summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:152: missing file link 'readCls'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/Gsri-class.Rd:153: missing file link 'readGct'
    export                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:49: missing file link 'getGsri'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:50: missing file link 'getCdf'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:51: missing file link 'getParms'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:55: missing file link 'show'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:56: missing file link 'summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:57: missing file link 'readCls'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/export.Rd:58: missing file link 'readGct'
    get-methods                             html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:78: missing file link 'getGsri'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:79: missing file link 'getCdf'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:80: missing file link 'getParms'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:84: missing file link 'show'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:85: missing file link 'summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:86: missing file link 'readCls'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/get-methods.Rd:87: missing file link 'readGct'
    gsri                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:228: missing file link 'getGsri'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:229: missing file link 'getCdf'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:230: missing file link 'getParms'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:234: missing file link 'show'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:235: missing file link 'summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:236: missing file link 'readCls'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/gsri.Rd:237: missing file link 'readGct'
    plot                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:91: missing file link 'getGsri'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:92: missing file link 'getCdf'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:93: missing file link 'getParms'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:97: missing file link 'show'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:98: missing file link 'summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:99: missing file link 'readCls'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/plot.Rd:100: missing file link 'readGct'
    read-functions                          html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:63: missing file link 'getGsri'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:64: missing file link 'getCdf'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:65: missing file link 'getParms'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:69: missing file link 'show'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:70: missing file link 'summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:71: missing file link 'readCls'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/read-functions.Rd:72: missing file link 'readGct'
    sortGsri                                html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:62: missing file link 'getGsri'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:63: missing file link 'getCdf'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:64: missing file link 'getParms'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:68: missing file link 'show'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:69: missing file link 'summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:70: missing file link 'readCls'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/sortGsri.Rd:71: missing file link 'readGct'
    test-functions                          html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:97: missing file link 'getGsri'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:98: missing file link 'getCdf'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:99: missing file link 'getParms'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:103: missing file link 'show'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:104: missing file link 'summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:105: missing file link 'readCls'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsRNyDN/R.INSTALL2c084417658/GSRI/man/test-functions.Rd:106: missing file link 'readGct'
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GSRI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSRI' as GSRI_2.26.0.zip
* DONE (GSRI)
In R CMD INSTALL
In R CMD INSTALL

Tests output


Example timings

GSRI.Rcheck/examples_i386/GSRI-Ex.timings

nameusersystemelapsed
GSRI-package1.950.072.03
Gsri-class000
export000
get-methods000
gsri1.450.001.45
plot000
read-functions000
sortGsri000
test-functions000

GSRI.Rcheck/examples_x64/GSRI-Ex.timings

nameusersystemelapsed
GSRI-package1.300.031.32
Gsri-class0.010.000.01
export000
get-methods000
gsri0.820.020.83
plot000
read-functions000
sortGsri000
test-functions000