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BUILD report for GMRP on tokay1

This page was generated on 2018-04-12 13:27:44 -0400 (Thu, 12 Apr 2018).

Package 594/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GMRP 1.6.0
Yuan-De Tan
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/GMRP
Branch: RELEASE_3_6
Last Commit: 0099be1
Last Changed Date: 2017-10-30 12:41:14 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded [ ERROR ] skipped  skipped 
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: GMRP
Version: 1.6.0
Command: chmod a+r GMRP -R && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GMRP
StartedAt: 2018-04-11 21:01:08 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 21:01:27 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 18.8 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r GMRP -R && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GMRP
###
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* checking for file 'GMRP/DESCRIPTION' ... OK
* preparing 'GMRP':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.6-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: diagram
Loading required package: shape
Loading required package: plotrix
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
    clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
    parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame,
    cbind, colMeans, colSums, colnames, do.call, duplicated, eval, evalq, get,
    grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
    rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges
Loading required package: GenomeInfoDb
Warning in plot.window(...) : "labelrad" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "labelrad" is not a graphical parameter
Warning in title(...) : "labelrad" is not a graphical parameter
Warning in plot.window(...) : "labelrad" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "labelrad" is not a graphical parameter
Warning in title(...) : "labelrad" is not a graphical parameter
Warning in plot.window(...) : "labelrad" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "labelrad" is not a graphical parameter
Warning in title(...) : "labelrad" is not a graphical parameter
Warning in plot.window(...) : "labelrad" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "labelrad" is not a graphical parameter
Warning in title(...) : "labelrad" is not a graphical parameter
Warning: running command '"C:\PROGRA˜1\MIKTEX˜1.9\miktex\bin\x64\texify.exe" --quiet --pdf "GMRP.tex" --max-iterations=20 -I "C:/Users/biocbuild/bbs-3.6-bioc/R/share/texmf/tex/latex" -I "C:/Users/biocbuild/bbs-3.6-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: running 'texi2dvi' on 'GMRP.tex' failed

LaTeX errors:
ttes/GMRP.tex:19: LaTeX Error: Something's wrong--perhaps a missing \item.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help
Try typing  <return>  to proceed.
ttes/GMRP.tex:19: LaTeX Error: Something's wrong--perhaps a missing \item.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help
Try typing  <return>  to proceed.
Execution halted