Back to Multiple platform build/check report for BioC 3.6
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for DirichletMultinomial on veracruz1

This page was generated on 2018-04-12 13:35:35 -0400 (Thu, 12 Apr 2018).

Package 371/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DirichletMultinomial 1.20.0
Martin Morgan
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/DirichletMultinomial
Branch: RELEASE_3_6
Last Commit: 251529f
Last Changed Date: 2017-10-30 12:39:40 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: DirichletMultinomial
Version: 1.20.0
Command: rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DirichletMultinomial_1.20.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DirichletMultinomial.buildbin-libdir
StartedAt: 2018-04-12 11:22:58 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 11:23:06 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 8.1 seconds
RetCode: 0
Status:  OK 
PackageFile: DirichletMultinomial_1.20.0.tgz
PackageFileSize: 704.8 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DirichletMultinomial_1.20.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DirichletMultinomial.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.20.0.tar.gz'
>>>>>>> 

* installing *source* package ‘DirichletMultinomial’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -Wall -g -O2  -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -Wall -g -O2  -c dirichlet_fit.c -o dirichlet_fit.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -Wall -g -O2  -c dirichlet_fit_main.c -o dirichlet_fit_main.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DirichletMultinomial.so R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DirichletMultinomial)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"