Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:26:00 -0400 (Thu, 12 Apr 2018).
Package 283/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ComplexHeatmap 1.17.1 Zuguang Gu
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | |||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: ComplexHeatmap |
Version: 1.17.1 |
Command: rm -rf ComplexHeatmap.buildbin-libdir ComplexHeatmap.Rcheck && mkdir ComplexHeatmap.buildbin-libdir ComplexHeatmap.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_1.17.1.tar.gz >ComplexHeatmap.Rcheck\00install.out 2>&1 && cp ComplexHeatmap.Rcheck\00install.out ComplexHeatmap-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ComplexHeatmap.buildbin-libdir --install="check:ComplexHeatmap-install.out" --force-multiarch --no-vignettes --timings ComplexHeatmap_1.17.1.tar.gz |
StartedAt: 2018-04-11 23:08:51 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 23:11:54 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 183.0 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: ComplexHeatmap.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf ComplexHeatmap.buildbin-libdir ComplexHeatmap.Rcheck && mkdir ComplexHeatmap.buildbin-libdir ComplexHeatmap.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_1.17.1.tar.gz >ComplexHeatmap.Rcheck\00install.out 2>&1 && cp ComplexHeatmap.Rcheck\00install.out ComplexHeatmap-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ComplexHeatmap.buildbin-libdir --install="check:ComplexHeatmap-install.out" --force-multiarch --no-vignettes --timings ComplexHeatmap_1.17.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ComplexHeatmap.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ComplexHeatmap/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ComplexHeatmap' version '1.17.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ComplexHeatmap' can be installed ... WARNING Found the following significant warnings: Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/ColorMapping-class.rd:21: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/Legend.rd:51: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/Legend.rd:48: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/annotation_legend_size-HeatmapList-method.rd:16: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/color_mapping_legend-ColorMapping-method.rd:60: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_annotation.rd:23: missing file link 'seekViewport' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_dend.rd:25: missing file link 'seekViewport' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_dimnames.rd:25: missing file link 'seekViewport' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_heatmap_body.rd:23: missing file link 'seekViewport' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_title.rd:25: missing file link 'seekViewport' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/dist2.rd:16: missing file link 'as.dist' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw-HeatmapList-method.rd:43: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw-HeatmapList-method.rd:46: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw_annotation_legend-HeatmapList-method.rd:16: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw_heatmap_legend-HeatmapList-method.rd:16: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/enhanced_basicplot.rd:32: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/heatmap_legend_size-HeatmapList-method.rd:16: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/is_abs_unit.rd:19: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/make_layout-HeatmapList-method.rd:53: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/make_layout-HeatmapList-method.rd:56: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_height.rd:15: missing file link 'textGrob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_height.rd:19: missing file link 'textGrob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_width.rd:15: missing file link 'textGrob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_width.rd:19: missing file link 'textGrob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/packLegend.rd:20: missing file link 'grob' See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ComplexHeatmap.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE License components which are templates and need '+ file LICENSE': MIT * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed Heatmap 17.22 0 17.22 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed Heatmap 25.07 0.01 25.09 densityHeatmap 6.31 0.00 6.31 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'test-all.R' OK ** running tests for arch 'x64' ... Running 'test-all.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ComplexHeatmap.Rcheck/00check.log' for details.
ComplexHeatmap.Rcheck/00install.out
install for i386 * installing *source* package 'ComplexHeatmap' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'ComplexHeatmap' finding HTML links ... done AdditiveUnit-class html AdditiveUnit html ColorMapping-class html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/ColorMapping-class.rd:21: missing file link 'grob' ColorMapping html ComplexHeatmap-package html Heatmap-class html Heatmap html HeatmapAnnotation-class html HeatmapAnnotation html HeatmapList-class html HeatmapList html Legend html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/Legend.rd:51: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/Legend.rd:48: missing file link 'grob' SingleAnnotation-class html SingleAnnotation html add.AdditiveUnit html add_heatmap-Heatmap-method html add_heatmap-HeatmapAnnotation-method html add_heatmap-HeatmapList-method html add_heatmap-dispatch html adjust_dend_by_leaf_width html anno_barplot html anno_boxplot html anno_density html anno_histogram html anno_link html anno_oncoprint_barplot html anno_points html anno_text html annotation_legend_size-HeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/annotation_legend_size-HeatmapList-method.rd:16: missing file link 'grob' color_mapping_legend-ColorMapping-method html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/color_mapping_legend-ColorMapping-method.rd:60: missing file link 'grob' columnAnnotation html column_anno_barplot html column_anno_boxplot html column_anno_density html column_anno_histogram html column_anno_link html column_anno_points html column_anno_text html column_dend-Heatmap-method html column_dend-HeatmapList-method html column_dend-dispatch html column_order-Heatmap-method html column_order-HeatmapList-method html column_order-dispatch html component_height-Heatmap-method html component_height-HeatmapList-method html component_height-dispatch html component_width-Heatmap-method html component_width-HeatmapList-method html component_width-dispatch html decorate_annotation html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_annotation.rd:23: missing file link 'seekViewport' decorate_column_dend html decorate_column_names html decorate_column_title html decorate_dend html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_dend.rd:25: missing file link 'seekViewport' decorate_dimnames html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_dimnames.rd:25: missing file link 'seekViewport' decorate_heatmap_body html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_heatmap_body.rd:23: missing file link 'seekViewport' decorate_row_dend html decorate_row_names html decorate_row_title html decorate_title html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/decorate_title.rd:25: missing file link 'seekViewport' densityHeatmap html dist2 html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/dist2.rd:16: missing file link 'as.dist' draw-Heatmap-method html draw-HeatmapAnnotation-method html draw-HeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw-HeatmapList-method.rd:43: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw-HeatmapList-method.rd:46: missing file link 'grob' draw-SingleAnnotation-method html draw-dispatch html draw_annotation-Heatmap-method html draw_annotation_legend-HeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw_annotation_legend-HeatmapList-method.rd:16: missing file link 'grob' draw_dend-Heatmap-method html draw_dimnames-Heatmap-method html draw_heatmap_body-Heatmap-method html draw_heatmap_legend-HeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/draw_heatmap_legend-HeatmapList-method.rd:16: missing file link 'grob' draw_heatmap_list-HeatmapList-method html draw_title-Heatmap-method html draw_title-HeatmapList-method html draw_title-dispatch html enhanced_basicplot html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/enhanced_basicplot.rd:32: missing file link 'grob' get_color_mapping_list-HeatmapAnnotation-method html get_color_mapping_param_list-HeatmapAnnotation-method html grid.dendrogram html grid.dendrogram2 html heatmap_legend_size-HeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/heatmap_legend_size-HeatmapList-method.rd:16: missing file link 'grob' ht_global_opt html is_abs_unit html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/is_abs_unit.rd:19: missing file link 'grob' make_column_cluster-Heatmap-method html make_layout-Heatmap-method html make_layout-HeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/make_layout-HeatmapList-method.rd:53: missing file link 'grob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/make_layout-HeatmapList-method.rd:56: missing file link 'grob' make_layout-dispatch html make_row_cluster-Heatmap-method html map_to_colors-ColorMapping-method html max_text_height html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_height.rd:15: missing file link 'textGrob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_height.rd:19: missing file link 'textGrob' max_text_width html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_width.rd:15: missing file link 'textGrob' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/max_text_width.rd:19: missing file link 'textGrob' oncoPrint html packLegend html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp02CY5c/R.INSTALL1e38745b5b5a/ComplexHeatmap/man/packLegend.rd:20: missing file link 'grob' plotDataFrame html prepare-Heatmap-method html rowAnnotation html row_anno_barplot html row_anno_boxplot html row_anno_density html row_anno_histogram html row_anno_link html row_anno_points html row_anno_text html row_dend-Heatmap-method html row_dend-HeatmapList-method html row_dend-dispatch html row_order-Heatmap-method html row_order-HeatmapList-method html row_order-dispatch html selectArea html set_component_height-Heatmap-method html show-ColorMapping-method html show-Heatmap-method html show-HeatmapAnnotation-method html show-HeatmapList-method html show-SingleAnnotation-method html show-dispatch html unify_mat_list html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'ComplexHeatmap' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ComplexHeatmap' as ComplexHeatmap_1.17.1.zip * DONE (ComplexHeatmap) In R CMD INSTALL In R CMD INSTALL
ComplexHeatmap.Rcheck/tests_i386/test-all.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > suppressWarnings(suppressPackageStartupMessages(library(ComplexHeatmap))) > > test_check("ComplexHeatmap") == testthat results =========================================================== OK: 17 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 1.28 0.04 1.39 |
ComplexHeatmap.Rcheck/tests_x64/test-all.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > suppressWarnings(suppressPackageStartupMessages(library(ComplexHeatmap))) > > test_check("ComplexHeatmap") == testthat results =========================================================== OK: 17 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 1.60 0.04 1.65 |
ComplexHeatmap.Rcheck/examples_i386/ComplexHeatmap-Ex.timings
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ComplexHeatmap.Rcheck/examples_x64/ComplexHeatmap-Ex.timings
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