Lihua Julie Zhu
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/CRISPRseek |
| Branch: RELEASE_3_6 |
| Last Commit: f83f8b0 |
| Last Changed Date: 2017-10-30 12:40:10 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:23:38 -0400 (Thu, 12 Apr 2018).
| Package 308/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CRISPRseek 1.18.0 Lihua Julie Zhu
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: CRISPRseek |
| Version: 1.18.0 |
| Command: cd CRISPRseek.buildbin-libdir/CRISPRseek && zip -r ../../CRISPRseek_1.18.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:32:53 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:33:32 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 38.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CRISPRseek_1.18.0.zip |
| PackageFileSize: 924.3 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd CRISPRseek.buildbin-libdir/CRISPRseek && zip -r ../../CRISPRseek_1.18.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 56%) adding: DESCRIPTION (332 bytes security) (deflated 46%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/CRISPRseek.pdf (332 bytes security) (deflated 13%) adding: doc/CRISPRseek.R (332 bytes security) (deflated 83%) adding: doc/CRISPRseek.Rnw (332 bytes security) (deflated 70%) adding: doc/index.html (332 bytes security) (deflated 59%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/cpf1.fa (332 bytes security) (deflated 39%) adding: extdata/DoenchNBT2014.csv (332 bytes security) (deflated 49%) adding: extdata/ForTestinguniqueREs.RData (332 bytes security) (stored 0%) adding: extdata/gRNAProvidedSearch/ (372 bytes security) (stored 0%) adding: extdata/gRNAProvidedSearch/gRNAsCRISPRseek.bed (332 bytes security) (deflated 13%) adding: extdata/gRNAProvidedSearch/OfftargetAnalysis.xls (332 bytes security) (deflated 68%) adding: extdata/gRNAProvidedSearch/REcutDetails.xls (332 bytes security) (deflated 29%) adding: extdata/gRNAProvidedSearch/Summary.xls (332 bytes security) (deflated 61%) adding: extdata/gRNAProvidedSearchNOoffTarget/ (372 bytes security) (stored 0%) adding: extdata/gRNAProvidedSearchNOoffTarget/OfftargetAnalysis.xls (332 bytes security) (deflated 52%) adding: extdata/gRNAProvidedSearchNOoffTarget/Summary.xls (332 bytes security) (deflated 62%) adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/ (372 bytes security) (stored 0%) adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/gRNAsCRISPRseek.bed (332 bytes security) (deflated 11%) adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/OfftargetAnalysis.xls (332 bytes security) (deflated 52%) adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/REcutDetails.xls (332 bytes security) (deflated 24%) adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/Summary.xls (332 bytes security) (deflated 62%) adding: extdata/hits.txt (332 bytes security) (deflated 73%) adding: extdata/inputseq.fa (332 bytes security) (deflated 13%) adding: extdata/NatureBiot2016SuppTable19DoenchRoot.csv (332 bytes security) (deflated 57%) adding: extdata/NEBenzymes.fa (332 bytes security) (deflated 55%) adding: extdata/pairedSearch/ (372 bytes security) (stored 0%) adding: extdata/pairedSearch/withoutRE/ (372 bytes security) (stored 0%) adding: extdata/pairedSearch/withoutRE/OfftargetAnalysis.xls (332 bytes security) (deflated 69%) adding: extdata/pairedSearch/withoutRE/pairedgRNAs.xls (332 bytes security) (deflated 36%) adding: extdata/pairedSearch/withoutRE/REcutDetails.xls (332 bytes security) (deflated 84%) adding: extdata/pairedSearch/withoutRE/Summary.xls (332 bytes security) (deflated 61%) adding: extdata/pairedSearch/withRE/ (372 bytes security) (stored 0%) adding: extdata/pairedSearch/withRE/OfftargetAnalysis.xls (332 bytes security) (deflated 69%) adding: extdata/pairedSearch/withRE/pairedgRNAs.xls (332 bytes security) (deflated 36%) adding: extdata/pairedSearch/withRE/REcutDetails.xls (332 bytes security) (deflated 84%) adding: extdata/pairedSearch/withRE/Summary.xls (332 bytes security) (deflated 61%) adding: extdata/recreateTestResults.R (332 bytes security) (deflated 80%) adding: extdata/RIPK1stop.fa (332 bytes security) (deflated 44%) adding: extdata/rs362331C.fa (332 bytes security) (deflated 19%) adding: extdata/rs362331T.fa (332 bytes security) (deflated 15%) adding: extdata/seqs2.5prime.RData (332 bytes security) (stored 0%) adding: extdata/seqs2.RData (332 bytes security) (stored 0%) adding: extdata/seqs2CFD.RData (332 bytes security) (stored 0%) adding: extdata/T2.fa (332 bytes security) (deflated 25%) adding: extdata/T2plus100OffTargets.bed (332 bytes security) (deflated 70%) adding: extdata/test.bed (332 bytes security) (deflated 21%) adding: extdata/testHsap_GATA1_ex2_gRNA1.fa (332 bytes security) (deflated 2%) adding: extdata/testMouse/ (372 bytes security) (stored 0%) adding: extdata/testMouse/NOorgAnn/ (372 bytes security) (stored 0%) adding: extdata/testMouse/NOorgAnn/mRIPK1stop.gbk (332 bytes security) (deflated 76%) adding: extdata/testMouse/NOorgAnn/OfftargetAnalysis.xls (332 bytes security) (deflated 85%) adding: extdata/testMouse/NOorgAnn/pairedgRNAs.xls (332 bytes security) (deflated 82%) adding: extdata/testMouse/NOorgAnn/REcutDetails.xls (332 bytes security) (deflated 80%) adding: extdata/testMouse/NOorgAnn/RIPK1stopallgRNAs.fa (332 bytes security) (deflated 73%) adding: extdata/testMouse/NOorgAnn/Summary.xls (332 bytes security) (deflated 75%) adding: extdata/testMouse/NOTannotateExon/ (372 bytes security) (stored 0%) adding: extdata/testMouse/NOTannotateExon/mRIPK1stop.gbk (332 bytes security) (deflated 76%) adding: extdata/testMouse/NOTannotateExon/OfftargetAnalysis.xls (332 bytes security) (deflated 85%) adding: extdata/testMouse/NOTannotateExon/pairedgRNAs.xls (332 bytes security) (deflated 82%) adding: extdata/testMouse/NOTannotateExon/REcutDetails.xls (332 bytes security) (deflated 80%) adding: extdata/testMouse/NOTannotateExon/RIPK1stopallgRNAs.fa (332 bytes security) (deflated 73%) adding: extdata/testMouse/NOTannotateExon/Summary.xls (332 bytes security) (deflated 75%) adding: extdata/testMouse/WithorgAnn/ (372 bytes security) (stored 0%) adding: extdata/testMouse/WithorgAnn/mRIPK1stop.gbk (332 bytes security) (deflated 76%) adding: extdata/testMouse/WithorgAnn/OfftargetAnalysis.xls (332 bytes security) (deflated 85%) adding: extdata/testMouse/WithorgAnn/pairedgRNAs.xls (332 bytes security) (deflated 82%) adding: extdata/testMouse/WithorgAnn/REcutDetails.xls (332 bytes security) (deflated 80%) adding: extdata/testMouse/WithorgAnn/RIPK1stopallgRNAs.fa (332 bytes security) (deflated 73%) adding: extdata/testMouse/WithorgAnn/Summary.xls (332 bytes security) (deflated 75%) adding: extdata/testNoTarget/ (372 bytes security) (stored 0%) adding: extdata/testNoTarget/negativeCntl-gRNA.fa (332 bytes security) (deflated 8%) adding: extdata/testNoTarget/OfftargetAnalysis.xls (332 bytes security) (deflated 63%) adding: extdata/testNoTarget/Summary.xls (332 bytes security) (deflated 63%) adding: extdata/testspeed.fa (332 bytes security) (deflated 97%) adding: extdata/tobi2.fa (332 bytes security) (stored 0%) adding: extdata/unPairedSearch/ (372 bytes security) (stored 0%) adding: extdata/unPairedSearch/withoutRE/ (372 bytes security) (stored 0%) adding: extdata/unPairedSearch/withoutRE/OfftargetAnalysis.xls (332 bytes security) (deflated 71%) adding: extdata/unPairedSearch/withoutRE/pairedgRNAs.xls (332 bytes security) (deflated 36%) adding: extdata/unPairedSearch/withoutRE/REcutDetails.xls (332 bytes security) (deflated 71%) adding: extdata/unPairedSearch/withoutRE/Summary.xls (332 bytes security) (deflated 66%) adding: extdata/unPairedSearch/withRE/ (372 bytes security) (stored 0%) adding: extdata/unPairedSearch/withRE/OfftargetAnalysis.xls (332 bytes security) (deflated 71%) adding: extdata/unPairedSearch/withRE/pairedgRNAs.xls (332 bytes security) (deflated 36%) adding: extdata/unPairedSearch/withRE/REcutDetails.xls (332 bytes security) (deflated 71%) adding: extdata/unPairedSearch/withRE/Summary.xls (332 bytes security) (deflated 64%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 60%) adding: help/CRISPRseek.rdb (332 bytes security) (deflated 1%) adding: help/CRISPRseek.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 70%) adding: html/annotateOffTargets.html (332 bytes security) (deflated 56%) adding: html/buildFeatureVectorForScoring.html (332 bytes security) (deflated 62%) adding: html/calculategRNAEfficiency.html (332 bytes security) (deflated 56%) adding: html/compare2Sequences.html (332 bytes security) (deflated 71%) adding: html/CRISPRseek-package.html (332 bytes security) (deflated 68%) adding: html/filtergRNA.html (332 bytes security) (deflated 65%) adding: html/filterOffTarget.html (332 bytes security) (deflated 64%) adding: html/findgRNAs.html (332 bytes security) (deflated 67%) adding: html/foldgRNAs.html (332 bytes security) (deflated 55%) adding: html/getOfftargetScore.html (332 bytes security) (deflated 62%) adding: html/isPatternUnique.html (332 bytes security) (deflated 54%) adding: html/offTargetAnalysis.html (332 bytes security) (deflated 70%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/searchHits.html (332 bytes security) (deflated 64%) adding: html/searchHits2.html (332 bytes security) (deflated 64%) adding: html/translatePattern.html (332 bytes security) (deflated 52%) adding: html/uniqueREs.html (332 bytes security) (deflated 60%) adding: html/writeHits.html (332 bytes security) (deflated 63%) adding: html/writeHits2.html (332 bytes security) (deflated 63%) adding: INDEX (332 bytes security) (deflated 63%) adding: MD5 (332 bytes security) (deflated 61%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 48%) adding: NEWS (332 bytes security) (deflated 69%) adding: R/ (372 bytes security) (stored 0%) adding: R/CRISPRseek (332 bytes security) (deflated 41%) adding: R/CRISPRseek.rdb (332 bytes security) (deflated 1%) adding: R/CRISPRseek.rdx (332 bytes security) (stored 0%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/test_compare2Sequences.R (332 bytes security) (deflated 80%) adding: unitTests/test_getOfftargetScore2.R (332 bytes security) (deflated 70%) adding: unitTests/test_gRNAprovidedCompare2Seqs.R (332 bytes security) (deflated 72%) adding: unitTests/test_gRNAprovidedNoPAM.R (332 bytes security) (deflated 77%) adding: unitTests/test_mouse_orgAnn_annotateExon.R (332 bytes security) (deflated 82%) adding: unitTests/test_offTargetAnalysis.R (332 bytes security) (deflated 88%) adding: unitTests/test_targetNotFound.R (332 bytes security) (deflated 66%)